View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_15 (Length: 250)
Name: NF11724_low_15
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 51753853 - 51754094
Alignment:
| Q |
1 |
agggtaaaataacagtttcaagctatcaggtacaactatttttggaattaatctaagcttagtagttttggaagctattacaagatatttgcattttcat |
100 |
Q |
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| T |
51753853 |
agggtaaaataacagtttcaagctatcaggtacaactatttttggaattaatctaagcttagtagttttggaagctattacaagatatttgcattttcat |
51753952 |
T |
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| Q |
101 |
caagtaccattacaaagtgcttgttccatgccttg-aacaaagcaaaagtgaaaaattgaagataggtcttccaagattacataccatgctctcggatac |
199 |
Q |
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| T |
51753953 |
caagtaccattacaaagtgcttgttccatgccttgaaactaagcaaaagtgaaaaattgaagataggtcttccaagattacataccatgctctcggatac |
51754052 |
T |
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| Q |
200 |
catgtgcaaaaccatcatcttttcttccaaacatgttcatct |
241 |
Q |
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| T |
51754053 |
catgtgcaaaaccatcatcttttcttccaaacatgttcatct |
51754094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 140 - 241
Target Start/End: Complemental strand, 5522949 - 5522848
Alignment:
| Q |
140 |
aagcaaaagtgaaaaattgaagataggtcttccaagattacataccatgctctcggataccatgtgcaaaaccatcatcttttcttccaaacatgttcat |
239 |
Q |
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||||||| |||||| ||||||||| |||| ||||||||||||||||||| ||| ||||||||||||| ||| | |||||||||||||||||||| |
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| T |
5522949 |
aagcaaaggtgaaacattgaagattaatctttggagattacataccatgctcttggactccatgtgcaaaactgtcaccctttcttccaaacatgttcat |
5522850 |
T |
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| Q |
240 |
ct |
241 |
Q |
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|| |
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| T |
5522849 |
ct |
5522848 |
T |
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