View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_3 (Length: 568)
Name: NF11724_low_3
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 203; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 85 - 350
Target Start/End: Original strand, 56377293 - 56377546
Alignment:
| Q |
85 |
atgtcccaacacctcacctctataagcttaagttctttgtttagtgcttccactcactcactcactaccaaaaactcatctcttctcttctctttcttta |
184 |
Q |
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| T |
56377293 |
atgtcccaacacctcacctctataagcttaagttctttgtttagtgcttccactcactcact----accaaaaactcatctc-----ttctctttcttta |
56377383 |
T |
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| Q |
185 |
ttgcctagctagttactctaatgttattatcctgtcataacataatataataataagcatggaaacttgtatttgatgtatcttcacttcacttcttctc |
284 |
Q |
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| T |
56377384 |
ttgactagctagttactctaatgttattatcctgtcataacataatataataataagcatggaaacttgtatttgatgtatcttcacttcacttcttctc |
56377483 |
T |
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| Q |
285 |
caattcatcaattcttcttctgtatgtggctgactacttgattctcaattaattagctaaaccaac |
350 |
Q |
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| T |
56377484 |
caattcatcaa---ttcttctgcatgtggctgactacttcattctcaattaattagctaaaccaac |
56377546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 422 - 558
Target Start/End: Original strand, 56377613 - 56377746
Alignment:
| Q |
422 |
gaggagagatataacacccagggtgggaaagtgtcttgtatgcttataaagttgtcttctcatcattaccatatgtttctgcagtagtgcatgccctact |
521 |
Q |
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| T |
56377613 |
gaggagagatataacacccagggtgggaaagtgtcttgtatgcttataaagttgtcttctcatcattaccatatgtttctgc---agtggatgccctact |
56377709 |
T |
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| Q |
522 |
aattaattgcttgcttgcaattcttgatccctttcat |
558 |
Q |
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| T |
56377710 |
aattaattacttgcttgcaattcttgatccctttcat |
56377746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 56377209 - 56377268
Alignment:
| Q |
18 |
tctctctctcttacctttattgtgccttcctctttgtctgttaaaatctgctttttctcc |
77 |
Q |
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| T |
56377209 |
tctctctctcttacctttattgtgtcttcctctttgtctgttaaaatctgctttttctcc |
56377268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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