View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11724_low_4 (Length: 552)
Name: NF11724_low_4
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 427; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 19 - 534
Target Start/End: Complemental strand, 2492311 - 2491790
Alignment:
| Q |
19 |
ttatgctaatgtatcgtttcttccaagtggtgagtcctttgacttttggttagttctttttaaatataacctatttctcaattataattgtctatcctat |
118 |
Q |
| |
|
|||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
2492311 |
ttatgctagtgtatcctttcttccaagtggtgagtcctttgacttttggttagttctttttaaatataacatatttctcaattataattgtctatcctat |
2492212 |
T |
|
| Q |
119 |
caatttaagattcataag--------ttgtctatcctcaattgaaatatgcactcctctcgacttaaatattagcaaaaaatacatgtatctggatcaca |
210 |
Q |
| |
|
|||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2492211 |
caatttaagattcacaaggacacatgttgtctatcctcaactgaaatatgcactcctctcgacttaaatattagcaaaaaatacatgtatctggatcaca |
2492112 |
T |
|
| Q |
211 |
tttcgacaagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2492111 |
tttcgacaagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttacag |
2492012 |
T |
|
| Q |
311 |
gaaaatatgtatttttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaattactgga |
410 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2492011 |
gaaaatctgta--tttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaattactgga |
2491914 |
T |
|
| Q |
411 |
agatcattttaacnnnnnnnctaactgtagatgcttgttcaaaagcagctctaagatatttttatatggctacacttattttccttgtgatgtctaataa |
510 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
2491913 |
agatcattttaactttttttctaactgtagatgcttgttgaaaagcagctctaagatatttttatatggctacacttactttccttgtgatgtctaataa |
2491814 |
T |
|
| Q |
511 |
ggaagccaagctaatataaatttt |
534 |
Q |
| |
|
||||||||||||||||||| |||| |
|
|
| T |
2491813 |
ggaagccaagctaatataagtttt |
2491790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 19 - 403
Target Start/End: Complemental strand, 2489024 - 2488636
Alignment:
| Q |
19 |
ttatgctaatgtatcgtttcttccaagtggtgagtcctttgacttttggttagttctttttaaatataacctatttctcaattataattgtctatcctat |
118 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||||||||||||| |||||||||||| || ||| |||||| ||| ||||||||| |||||||| |
|
|
| T |
2489024 |
ttatgctaatgtatccactcttcaaagtggtgagtcctttgacttttgattagttctttttcaaaatatgctatttatcagttataattgcctatcctac |
2488925 |
T |
|
| Q |
119 |
caatttaagattcataa---------gttgtctatcctcaattgaaatatgcactcctctcgacttaaatattagc-aaaaaatacatgtatctggatca |
208 |
Q |
| |
|
| |||| | ||||| | ||||||||||||||| |||||||| ||||||||||||||||||||| ||| |||||||||| |||||| | || |
|
|
| T |
2488924 |
cgatttgacattcaccacgacacagtgttgtctatcctcaactgaaatattcactcctctcgacttaaatataagcaaaaaaatacacgtatcttgtcca |
2488825 |
T |
|
| Q |
209 |
catttcgacaagttaattacttggggaacaagatacttgtacgttttgcttttatttaagtagagaggagtgtgtctttaacttataagaatgtctttac |
308 |
Q |
| |
|
||| |||||| |||| ||| |||| |||||| ||||| |||||| ||||||||||| ||||||||| ||| ||||||||||||||| |||||| |
|
|
| T |
2488824 |
tgtttagacaag----ttacatggtgaaccagatacatgtactttttgcgtttatttaagttgagaggagtatgtatttaacttataagaaagtctttgt |
2488729 |
T |
|
| Q |
309 |
aggaaaatatgtatttttatataggagttaaacgcggaggtttacaagttaagatgttaacttacatgagaagctattattaaaagacttgaaat |
403 |
Q |
| |
|
||| |||| ||| |||||| || || ||| | |||| ||||| || ||| ||||||||||| || | |||||| | || ||||||||||||| |
|
|
| T |
2488728 |
tggagaataagta--tttataaagaagctaaccacggacgtttaggagataaaatgttaacttatataacaagctactgtttaaagacttgaaat |
2488636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 2495417 - 2495362
Alignment:
| Q |
37 |
tcttccaagtggtgagtcctttgacttttggttagttctttttaaatataacctat |
92 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||| ||| ||| |||| |
|
|
| T |
2495417 |
tcttctaagtggtgagtcctttgacttttggttagttctttttcaatttaagctat |
2495362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 136 - 204
Target Start/End: Complemental strand, 2495329 - 2495261
Alignment:
| Q |
136 |
gttgtctatcctcaattgaaatatgcactcctctcgacttaaatattagcaaaaaatacatgtatctgg |
204 |
Q |
| |
|
||||| |||| |||| ||||||||| |||||||||||||||| ||| |||| ||| ||||||||||||| |
|
|
| T |
2495329 |
gttgtatatcttcaactgaaatatgtactcctctcgacttaattataagcagaaagtacatgtatctgg |
2495261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 354 - 401
Target Start/End: Complemental strand, 2495150 - 2495102
Alignment:
| Q |
354 |
aagttaagatgttaacttacatgagaagctatt-attaaaagacttgaa |
401 |
Q |
| |
|
||||||||||||||||||| |||| |||||||| |||||||||||||| |
|
|
| T |
2495150 |
aagttaagatgttaacttatatgacaagctattgtttaaaagacttgaa |
2495102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University