View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_5 (Length: 524)
Name: NF11724_low_5
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 16 - 345
Target Start/End: Original strand, 47170141 - 47170470
Alignment:
| Q |
16 |
agagagaaaataaggttaaaacaagagagnnnnnnncatgtctggttgggctattgctgttcatggcggcgcaggtgtggatcctaacctgccaccacac |
115 |
Q |
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| T |
47170141 |
agagagaaaataaggttaaaacaagagagaaaaaaacatgtctggttgggctattgctgttcatggcggtgcaggtgtggatcctaacctcccaccacac |
47170240 |
T |
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| Q |
116 |
cgtcagcaagaagccaaacagcttcttaccgaatgtctcaatctcggtatctctgctctccgatccaatgcttccgccctcgacgtcgtcgaactcgtcg |
215 |
Q |
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| T |
47170241 |
cgtcagcaagaagccaaacagcttcttaccgaatgtctcaatctcggtatctctgctctccgatccaatgcttccgccctcgacgtcgtcgaactcgtcg |
47170340 |
T |
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| Q |
216 |
tatgttttcccattcccatgtctcttccgtaataaacctaacctaatttatatcatttataatcatgggataatgttacatgcatgcctatgcacataaa |
315 |
Q |
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| T |
47170341 |
tatgttttcccattcccatgtctcttccgtaataaacctaacctaatttatatcatttataatcatgggataatgttacatgcatgcctatgcacataaa |
47170440 |
T |
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| Q |
316 |
tgaatcaaatccataatgacaacaatataa |
345 |
Q |
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| T |
47170441 |
tgaatcaaatccataatgacaataatataa |
47170470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 416 - 507
Target Start/End: Original strand, 47170541 - 47170632
Alignment:
| Q |
416 |
gataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagt |
507 |
Q |
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| T |
47170541 |
gataggtgagaaagttagaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctagt |
47170632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 58 - 231
Target Start/End: Complemental strand, 42165733 - 42165560
Alignment:
| Q |
58 |
tggttgggctattgctgttcatggcggcgcaggtgtggatcctaacctgccaccacaccgtcagcaagaagccaaacagcttcttaccgaatgtctcaat |
157 |
Q |
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| T |
42165733 |
tggttgggctattgctgtgcatggtggcgccggtgtggatcctaatctcccaccacaacgtcaggaagaagccaaacaacttcttactcattgtcttaat |
42165634 |
T |
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| Q |
158 |
ctcggtatctctgctctccgatccaatgcttccgccctcgacgtcgtcgaactcgtcgtatgttttcccattcc |
231 |
Q |
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| T |
42165633 |
attggcatatttgctctccgttccaatggttctgctgtcgatgtcgttgaacttgttgtatgttttctcattcc |
42165560 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 448 - 506
Target Start/End: Complemental strand, 42163781 - 42163723
Alignment:
| Q |
448 |
ttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctag |
506 |
Q |
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| T |
42163781 |
ttcaattctgggcgtggatctgctttgacagcaaaaggaacagttgaaatggaggctag |
42163723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 433 - 506
Target Start/End: Complemental strand, 5480762 - 5480689
Alignment:
| Q |
433 |
gaaacagacccacttttcaattctggccgtggatctgctctgacagcaaaaggaacggtggaaatggaggctag |
506 |
Q |
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||||| || ||||| |||||||| || ||||||||||| ||||| | ||||||||||||||||||||||||||| |
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| T |
5480762 |
gaaacggatccactattcaattcgggtcgtggatctgccctgacggaaaaaggaacggtggaaatggaggctag |
5480689 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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