View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_6 (Length: 501)
Name: NF11724_low_6
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 473; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 1 - 485
Target Start/End: Complemental strand, 41812323 - 41811839
Alignment:
| Q |
1 |
gattcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgtaactcctccaataaatggtttt |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41812323 |
gattcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgcaactcctccaataaatggtttt |
41812224 |
T |
|
| Q |
101 |
tatctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataatt |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812223 |
tatctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataatt |
41812124 |
T |
|
| Q |
201 |
attgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttca |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812123 |
attgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttca |
41812024 |
T |
|
| Q |
301 |
ttgtcagtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttctcttccaactttctaaagctctcttcctcttggtttgacaggcaaagct |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41812023 |
ttgtcagtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttttcttccacctttctaaagctctcttcctcttggtttgacaggcaaagct |
41811924 |
T |
|
| Q |
401 |
ttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttcaacttg |
485 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41811923 |
ttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttcaacttg |
41811839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 41799107 - 41798804
Alignment:
| Q |
1 |
gattcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgtaactcctccaataaatggtttt |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||| ||||||| || | ||||||| || || |||||||||||||||| | ||||| || ||| | || |
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| T |
41799107 |
gattcctcctttcttgccttcacctctagcttctcaaccttttccctcagagttaattccccttcctttttaccctgcagttcctctaacaaacaatctt |
41799008 |
T |
|
| Q |
101 |
tatctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataatt |
200 |
Q |
| |
|
||||| |||||||||||||||| ||||| |||||| |||||||||||||||||||||||||||| | ||||||||||| ||| |||||||| ||| |
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| T |
41799007 |
tatctctctgtaactgccccttcaccctattcatcttgctgacagattcttttgcaacctgaagctcatgggagatgtttgatatgtagttctcatgatt |
41798908 |
T |
|
| Q |
201 |
attgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttca |
300 |
Q |
| |
|
|||| || || |||||||| ||| | |||||||||||||||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||| |
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| T |
41798907 |
tttgctttcgtcggaaaatttccggctcaaagtatctatcccagatatcacactgttgacacacactttaacacttgtgatagtttcatgaaaagcttca |
41798808 |
T |
|
| Q |
301 |
ttgt |
304 |
Q |
| |
|
|||| |
|
|
| T |
41798807 |
ttgt |
41798804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 3 - 307
Target Start/End: Complemental strand, 41805490 - 41805194
Alignment:
| Q |
3 |
ttcctcctttcttgcctttgcctctagcttttcaacctctttctgcagagttgatccctcttcctttttaccctgtaactcctccaataaatggt-tttt |
101 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| || | ||||||| || |||||||| |||||||||| | ||||||||| ||||||| |||| |
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|
| T |
41805490 |
ttccccctttcttgcctttgcctctagcttttcaaccttttccctcagagttaattcctcttcccttttaccctgcagctcctccaacaaatggtttttt |
41805391 |
T |
|
| Q |
102 |
atctgtctgtaactgccccttttccctactcatctcattgacagattcttttgcaacctgaagctcgtatgagatgtttgagatgcggttctcataatta |
201 |
Q |
| |
|
||||||||||||||||| ||||||| | |||||| ||||| | ||||||||| |||||||||||| ||| |||||||||||||||| ||| |
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|
| T |
41805390 |
atctgtctgtaactgcctcttttccttgttcatcttattgatatattcttttgtaacctgaagctc--atg-------tgagatgcggttctcaatattt |
41805300 |
T |
|
| Q |
202 |
ttgcagtcatccgaaaatttagagcttatagtatctatcccagatatcatactgttgacacactttttaatacttgtgatagtttcatgaaaagcttcat |
301 |
Q |
| |
|
||| | || |||| || |||||| |||||| || |||||||||| |||||||| |||| |||| |||||||||||||||||||||||||||||| |
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| T |
41805299 |
ttgtggatgtcaaaaaaatttaagcttacagtatcgattccagatatcacactgttgaaccactctttagtacttgtgatagtttcatgaaaagcttcat |
41805200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 41798673 - 41798569
Alignment:
| Q |
381 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
480 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||| ||||||| |||| ||||| ||| ||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
41798673 |
ttggtttgacaggcgaagctttacctcaagattcctgacattctcaaacaaagtgctaacctcatctcctttctcttccaggtctcttttcaggtcttca |
41798574 |
T |
|
| Q |
481 |
acttg |
485 |
Q |
| |
|
||||| |
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|
| T |
41798573 |
acttg |
41798569 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 306 - 379
Target Start/End: Complemental strand, 41798781 - 41798708
Alignment:
| Q |
306 |
agtagcaatcctgtcttcaagtgctctctgaacttgctgaaacttctc-ttccaactttctaaagctctcttcct |
379 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||| |||| |||||||||||||||||||| |
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|
| T |
41798781 |
agtagcaatcctgtcttcaagttctctctgaacttgctgaaac-tctcgttccgcctttctaaagctctcttcct |
41798708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 381 - 485
Target Start/End: Complemental strand, 41805066 - 41804962
Alignment:
| Q |
381 |
ttggtttgacaggcaaagctttacctcaagattcatgacattttcaagcaaagagctgacctcatctcctttctcttccaggtctcttttcagttcttca |
480 |
Q |
| |
|
||||||||||| || ||||||| || |||||||| |||||| ||||||||| || ||| | || |||||||| ||||||||| ||||||| |||||| |
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|
| T |
41805066 |
ttggtttgacaagcgaagcttttccccaagattctcgacattctcaagcaaaaaggtgatgttatttcctttcttgtccaggtcttttttcaggtcttca |
41804967 |
T |
|
| Q |
481 |
acttg |
485 |
Q |
| |
|
||||| |
|
|
| T |
41804966 |
acttg |
41804962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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