View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11724_low_7 (Length: 496)
Name: NF11724_low_7
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11724_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 14 - 478
Target Start/End: Complemental strand, 51753833 - 51753368
Alignment:
| Q |
14 |
agataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaaaga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753833 |
agataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaaaga |
51753734 |
T |
|
| Q |
114 |
tggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgctttttgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753733 |
tggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgctttttgt |
51753634 |
T |
|
| Q |
214 |
agtgagaaatccatcaagatctcttcaccaaaaggagaattgagtagagttcgctataaggtgannnnnnngcttaaatgtgcatgttaatgctctctat |
313 |
Q |
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| T |
51753633 |
agtgagaaatccatcaagatctcttcaccaaaaggagaattgagtagagttcgctataaggtgatttttttgcttaaatgtgcatgttaatgctctctat |
51753534 |
T |
|
| Q |
314 |
cacttttattttctcaacacttaa-ttgtttactatttcagccagcatgtaaccttaatttttggactatttcaggtatctattccacatgaaaagattc |
412 |
Q |
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|||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51753533 |
cacttttattttctcaacacttaatttgattactatttcagccagcatgtaaccttaatttttggactatttcaggtatctattccacatgaaaagattc |
51753434 |
T |
|
| Q |
413 |
agcatgtcaaccaaagtcaaaatgtgaagaaaccttcagaaaaatacatagaaatagtcaccgtag |
478 |
Q |
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| T |
51753433 |
agcatgtcaaccaaagtcaaaatgtgaagaaaccttcagaaaaatacatagaaatagtcaccgtag |
51753368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 118 - 275
Target Start/End: Complemental strand, 51766496 - 51766339
Alignment:
| Q |
118 |
gagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgctttttgtagtg |
217 |
Q |
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|||||||||||||||||||| ||||||||| ||||||| |||||||||| |||||| ||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
51766496 |
gagaagctgttgaaagcatctcagtgttacctatcaaccacatcaggtcttatagctggcctcctcttcatttccactcacaaaattgctttctgtagtg |
51766397 |
T |
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| Q |
218 |
agaaatccatcaagatctcttcaccaaaaggagaattgagtagagttcgctataaggt |
275 |
Q |
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| T |
51766396 |
acaaatccatcaaaatttcttcctcgaatggagaattgattagagttcactataaggt |
51766339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 16 - 248
Target Start/End: Complemental strand, 12196347 - 12196115
Alignment:
| Q |
16 |
ataacagatacagtaaaagggaaattgaggttgggagccagaattcttcaggttggcggagtagaaaaagtgtttatggaactttttagtgttaaagatg |
115 |
Q |
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||||| |||||||| ||||| || |||| || ||||| ||||||||||| ||||| ||||| ||||| ||||| ||| |||| |||||||| ||||||| |
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| T |
12196347 |
ataaccgatacagtgaaaggaaagctgagcttaggagctagaattcttcaagttggaggagtggaaaaggtgttcatgcaactatttagtgtaaaagatg |
12196248 |
T |
|
| Q |
116 |
gagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgctttttgtag |
215 |
Q |
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|||||| ||| | |||||||| || ||||| ||||||||||||| |||||| |||||||||| |||||||| || ||| | ||| |||| |||||||| |
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| T |
12196247 |
gagagaggctactaaaagcatctcaatgttatctatcaacaacatctggtcctctagcaggcctactcttcatatcaactaataaaattgccttttgtag |
12196148 |
T |
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| Q |
216 |
tgagaaatccatcaagatctcttcaccaaaagg |
248 |
Q |
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||||| ||| || || |||||||| |||||||| |
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| T |
12196147 |
tgagagatcaattaaaatctcttctccaaaagg |
12196115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 386 - 473
Target Start/End: Complemental strand, 51766342 - 51766255
Alignment:
| Q |
386 |
aggtatctattccacatgaaaagattcagcatgtcaaccaaagtcaaaatgtgaagaaaccttcagaaaaatacatagaaatagtcac |
473 |
Q |
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|||| |||||||||| ||||||||| || || |||||||||||||||||| ||| |||||| |||||||||||||||||||||||||| |
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| T |
51766342 |
aggtctctattccacttgaaaagatacaacaagtcaaccaaagtcaaaatatgatgaaaccgtcagaaaaatacatagaaatagtcac |
51766255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 110 - 218
Target Start/End: Complemental strand, 42395489 - 42395381
Alignment:
| Q |
110 |
aagatggagagaagctgttgaaagcatcacagtgttacttatcaacaacatcaggtcctatagcaggcctcctcttcatttccactcacaaagttgcttt |
209 |
Q |
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|||| |||||||| ||||||| || ||||| |||||||||| |||||| | |||||||| || || | || ||||| ||||| || |||||||| || |
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| T |
42395489 |
aagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctggtgttcttttcatctccacccaaaaagttgcatt |
42395390 |
T |
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| Q |
210 |
ttgtagtga |
218 |
Q |
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||||||||| |
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| T |
42395389 |
ttgtagtga |
42395381 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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