View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11724_low_8 (Length: 473)

Name: NF11724_low_8
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11724_low_8
NF11724_low_8
[»] chr4 (5 HSPs)
chr4 (16-471)||(54395849-54396304)
chr4 (44-459)||(23588032-23588447)
chr4 (56-459)||(23596884-23597287)
chr4 (236-293)||(9336356-9336413)
chr4 (263-383)||(35132129-35132249)
[»] chr7 (16 HSPs)
chr7 (41-459)||(8017712-8018130)
chr7 (41-459)||(8102118-8102536)
chr7 (251-430)||(17259902-17260081)
chr7 (251-430)||(17267600-17267779)
chr7 (44-459)||(39985100-39985515)
chr7 (251-383)||(7878108-7878240)
chr7 (251-383)||(8581361-8581493)
chr7 (254-288)||(8537700-8537734)
chr7 (254-300)||(8545297-8545343)
chr7 (248-383)||(8575984-8576119)
chr7 (248-383)||(8590296-8590431)
chr7 (248-298)||(8659021-8659071)
chr7 (236-293)||(10494839-10494896)
chr7 (236-293)||(13333833-13333890)
chr7 (254-383)||(27831250-27831379)
chr7 (254-351)||(29582248-29582345)
[»] chr2 (13 HSPs)
chr2 (248-377)||(12245787-12245916)
chr2 (248-383)||(11999066-11999200)
chr2 (251-383)||(12234351-12234482)
chr2 (236-383)||(16657892-16658039)
chr2 (248-321)||(16662429-16662502)
chr2 (245-309)||(5446218-5446282)
chr2 (257-357)||(17648442-17648542)
chr2 (260-384)||(17717061-17717185)
chr2 (236-351)||(43625058-43625173)
chr2 (257-459)||(17666982-17667184)
chr2 (257-351)||(17718358-17718452)
chr2 (251-300)||(7541887-7541936)
chr2 (251-300)||(14703069-14703118)
[»] chr8 (3 HSPs)
chr8 (251-411)||(12528165-12528325)
chr8 (249-377)||(42325181-42325309)
chr8 (323-384)||(43744549-43744610)
[»] chr1 (2 HSPs)
chr1 (234-300)||(4679015-4679081)
chr1 (254-371)||(15594698-15594815)
[»] chr5 (1 HSPs)
chr5 (254-297)||(28219582-28219625)


Alignment Details
Target: chr4 (Bit Score: 452; Significance: 0; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 16 - 471
Target Start/End: Original strand, 54395849 - 54396304
Alignment:
Q  16 attattatcctttgttcttgcacgttcaccttcaaaaacttgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttagta 115  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  54395849 attattatcctttgttcttgcacgttcaccttcaaaaacttgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttcgta 54395948  T
Q  116 ggaatcgtcgtgttccttggaatcaaagtcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaa 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54395949 ggaatcgtcgtgttccttggaatcaaagtcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaa 54396048  T
Q  216 ccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccatt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396049 ccttttcatcaccttcaccgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccatt 54396148  T
Q  316 gaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatccctt 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396149 gaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatccctt 54396248  T
Q  416 agacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttc 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54396249 agacacttctcaacaggttccatacatttcctaaacaaatccatattcaattcttc 54396304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 44 - 459
Target Start/End: Complemental strand, 23588447 - 23588032
Alignment:
Q  44 ccttcaaaaacttgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttagtaggaatcgtcgtgttccttggaatcaaag 143  Q
    |||||| | ||||||||||| ||||||||||| ||||| ||||| ||||| || |  ||||||||||| |||||||| || ||||| || ||||||||      
T  23588447 ccttcatagacttgaatcaacacaccaggttgattatcagagtaggttgaaaacacttgctccttcttggtaggaatggttgtgtttctaggaatcaata 23588348  T
Q  144 tcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaat 243  Q
      ||||| ||||| || || || ||||| || |     |||||||||||||| |||||||  ||||| || || || ||||  || ||||| ||||||||    
T  23588347 cagtcatgacacctcctgcggtctccaaaccaagggagagaggagtaacatccagcaacaacagatcctgcactttctcattgccctcaccactcaaaat 23588248  T
Q  244 cgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaact 343  Q
     || ||||| || || || ||||| |||||||||||||| ||||| || ||||| |||||||| || |||||||||||||| |||||||| ||||||||     
T  23588247 agcagcttggacggctgccccatatgcaacagcttcatcggggttgatgctcttacaaagctcctttccattgaagaaatcttgcaaaagttgttgaacc 23588148  T
Q  344 tttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatt 443  Q
    || |||||||| || |||||||||||||||||||| ||||| |||    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |    
T  23588147 ttgggaatcctagtggatccaccaacaagaacaacatcatggacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacact 23588048  T
Q  444 tcctaaacaaatccat 459  Q
    ||||||||| ||||||    
T  23588047 tcctaaacagatccat 23588032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 56 - 459
Target Start/End: Complemental strand, 23597287 - 23596884
Alignment:
Q  56 tgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttagtaggaatcgtcgtgttccttggaatcaaagtcgtcataacac 155  Q
    |||||||  ||||||||||||||||| || || || || || | |||||||||||| |||||||| || ||||| || ||||| ||    ||||| || |    
T  23597287 tgaatcagcacaccaggttggttatcagaataggtcgaaaacacctgctccttcttggtaggaattgttgtgtttctcggaattaacacagtcatgactc 23597188  T
Q  156 caccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaatcgctgcttgaac 255  Q
    | || ||||| ||||| || |    ||||||||||||||| ||||||| |||||| || || || ||||  ||||| ||||||||||| || ||||| ||    
T  23597187 ctcctgcagtctccaaaccaagggaaagaggagtaacatccagcaacaaaagatcctgtactttctcattgccttcgccgctcaaaatagcagcttggac 23597088  T
Q  256 agcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcctt 355  Q
     ||||| |||||||||||||| ||||||||||| || ||||| ||||| || ||||||||||||||||| |||||||| |||||||| || ||||||||     
T  23597087 tgcagcgccataagcaacagcctcatcagggttgatgctcttacaaagttccttcccattgaagaaatcttgcaaaagttgttgaaccttgggaatccta 23596988  T
Q  356 gttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaat 455  Q
    || ||||| |||||||||||||| |||| ||||    ||||||| |||||||||||||| | ||||||||||||||| |||||||| |||||||| | ||    
T  23596987 gtcgatccgccaacaagaacaacatcatcaacactgttcttatccatcttagcatccctcaaacacttctcaacaggctccatacacttcctaaatagat 23596888  T
Q  456 ccat 459  Q
    ||||    
T  23596887 ccat 23596884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 9336413 - 9336356
Alignment:
Q  236 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 293  Q
    |||||||| || ||||||||||| ||||||||||||||||| ||||| ||||| ||||    
T  9336413 ctcaaaatagcagcttgaacagctgcaccataagcaacagcctcatctgggttgatac 9336356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 263 - 383
Target Start/End: Original strand, 35132129 - 35132249
Alignment:
Q  263 ccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttgatc 362  Q
    |||||||| ||||| ||||| |||||||| |||||||| | ||| ||||| ||||| || |  ||||| ||||| || ||||| |||||||| |  || |    
T  35132129 ccataagctacagcctcatcggggttaatgctcttgcacaactccttccctttgaaaaagttttgcaatagctgctgcactttgggaatcctagaagacc 35132228  T
Q  363 caccaacaagaacaacttcat 383  Q
    | |||||||||||||| ||||    
T  35132229 ctccaacaagaacaacatcat 35132249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 1e-79; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 41 - 459
Target Start/End: Complemental strand, 8018130 - 8017712
Alignment:
Q  41 tcaccttcaaaaacttgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttagtaggaatcgtcgtgttccttggaatca 140  Q
    ||||||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||  ||||||||||| || ||||| || |||||||||||||| |    
T  8018130 tcaccttcataaacttggatcaacacaccaggttggttatctgagtaagtagagaaaacttgctccttcttggttggaattgtggtgttccttggaatta 8018031  T
Q  141 aagtcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaa 240  Q
    |    ||||| ||||||||||||||||| |  |||| |   |  ||||| ||||| |  | ||| | |||||||||||||||||  |||||||| |||||    
T  8018030 atacagtcatgacaccaccagcagtttctagacccagagacaatggagtgacatccaaaagcagcaaatcttgaaccttttcattgccttcaccactcaa 8017931  T
Q  241 aatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttga 340  Q
    ||| |||||||| ||||| ||||||||||||||||| || || ||||| |||||||||||||||||||| |||||||||||||| ||||| || || |||    
T  8017930 aattgctgcttgtacagcggcaccataagcaacagcctcgtctgggttgatactcttgcaaagctctttaccattgaagaaatcttgcaacagttgctga 8017831  T
Q  341 acttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatac 440  Q
    ||||| ||||| || ||||| || |||||||||||||| |||||||||    |||| || ||||||||||| || | ||||||||||||||| |||||||    
T  8017830 actttgggaattctagttgaaccgccaacaagaacaacatcatgaacagagttcttgtccatcttagcatctctcaaacacttctcaacaggctccatac 8017731  T
Q  441 atttcctaaacaaatccat 459  Q
    | || || |||| ||||||    
T  8017730 actttctgaacagatccat 8017712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 41 - 459
Target Start/End: Original strand, 8102118 - 8102536
Alignment:
Q  41 tcaccttcaaaaacttgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttagtaggaatcgtcgtgttccttggaatca 140  Q
    ||||||||| ||||||| |||||||||||||||||||| ||||| || || |||||||  ||||||||||| || ||||| || ||||||||||||||||    
T  8102118 tcaccttcataaacttggatcaaaacaccaggttggttgtctgaatacgtagagaaaacttgctccttcttggttggaatggtagtgttccttggaatca 8102217  T
Q  141 aagtcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaa 240  Q
    |    ||||| ||||| || ||||| ||||| ||   |   |  || || ||||| |  | ||  | |||||||||||| ||||  |||||||| |||||    
T  8102218 atacagtcatgacacctcctgcagtctccaaaccttgagacaatggggtgacatccaaaagcaacaaatcttgaaccttctcatttccttcaccactcaa 8102317  T
Q  241 aatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttga 340  Q
     || || ||||||||||| ||||||||||||||||| || || ||||| || || ||||| ||||| || ||||||||||| || ||||| || || |||    
T  8102318 gatagcagcttgaacagcggcaccataagcaacagcctcgtcggggttgatgcttttgcatagctccttaccattgaagaagtcttgcaacagttgctga 8102417  T
Q  341 acttttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatac 440  Q
    ||||| |||||||| ||||| ||||||||||||||||| ||||||||    ||||| || ||||||||||| || | ||||||||||||||| |||||||    
T  8102418 actttgggaatcctagttgaaccaccaacaagaacaacatcatgaactgtgctcttgtccatcttagcatctctcaaacacttctcaacaggctccatac 8102517  T
Q  441 atttcctaaacaaatccat 459  Q
    | ||||| |||| ||||||    
T  8102518 acttcctgaacagatccat 8102536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 251 - 430
Target Start/End: Original strand, 17259902 - 17260081
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 350  Q
    |||||||||||||||||||||||||| ||||||||||| || |||||||| |  || || || ||||||||||||||||| || || || ||||| ||||    
T  17259902 tgaacagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttacccttgaagaaatcctgcaatagttgctgcactttcggaa 17260001  T
Q  351 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaaca 430  Q
    |||| |  |||||||||||||| ||||| |||| ||     ||||| ||||||||| |||| || |||||||||||||||    
T  17260002 tcctagaagatccaccaacaaggacaacatcatcaattctgctcttgtcaatcttaccatcactaagacacttctcaaca 17260081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 251 - 430
Target Start/End: Original strand, 17267600 - 17267779
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 350  Q
    |||||||||||||||||||||||||| ||||||||||| ||||| ||||| |  || ||||| |||||||| | |||||| || || || ||||| ||||    
T  17267600 tgaacagcagcaccataagcaacagcctcatcagggttgatacttttgcataattccttccccttgaagaagttctgcaatagttgctgcactttcggaa 17267699  T
Q  351 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaaca 430  Q
    |||| |  || ||||||||||| ||||| |||| |||    ||||| |||||||||||||| || |||||||||||||||    
T  17267700 tcctagaagacccaccaacaaggacaacatcatcaactctgctcttgtcaatcttagcatcactaagacacttctcaaca 17267779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 44 - 459
Target Start/End: Original strand, 39985100 - 39985515
Alignment:
Q  44 ccttcaaaaacttgaatcaaaacaccaggttggttatctgagtaagttgagaaaatctgctccttcttagtaggaatcgtcgtgttccttggaatcaaag 143  Q
    |||||||||||||| ||||| || ||||| ||||| || || || || ||||||| ||| || ||||| || ||||| || || |||||||| || |       
T  39985100 ccttcaaaaacttggatcaacacgccaggctggttgtcagaatatgtagagaaaacctgttctttctttgttggaatagtggtattccttgggataagca 39985199  T
Q  144 tcgtcataacaccaccagcagtttccaaccccaaactaagaggagtaacatcaagcaacagaagatcttgaaccttttcatcaccttcaccgctcaaaat 243  Q
      ||||| |||||||||||||| ||||| || | |   ||||| || ||||| |  |  |||||||| |||||||| ||||  || ||||| ||||| ||    
T  39985200 cagtcatcacaccaccagcagtctccaaaccaagagatagaggggtgacatccaaaaggagaagatcctgaaccttctcattgccctcaccactcaagat 39985299  T
Q  244 cgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaact 343  Q
     || || ||||||||||||||||| |||||||| |||||||| || || |||||||| ||||| || || || |||||||| |||||||| ||||||||     
T  39985300 agcagcctgaacagcagcaccatatgcaacagcctcatcaggatttatgctcttgcatagctcctttccgttaaagaaatcttgcaaaagttgttgaacc 39985399  T
Q  344 tttggaatccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatt 443  Q
    |||||||| || || || || || ||||| ||||| || || |||    |||| || ||||| ||||| || | ||| |||||||| || ||||||||||    
T  39985400 tttggaattctggtagaacctcctacaaggacaacatcgtggacacttttcttgtccatcttggcatctctcaaacatttctcaactggctccatacatt 39985499  T
Q  444 tcctaaacaaatccat 459  Q
    | ||||| | ||||||    
T  39985500 ttctaaagagatccat 39985515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 251 - 383
Target Start/End: Complemental strand, 7878240 - 7878108
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 350  Q
    |||||||| ||||||||||||||||||||||| ||||| || ||  ||||||  || ||||| || || || |||||||| ||||| || |||||  |||    
T  7878240 tgaacagctgcaccataagcaacagcttcatccgggttgatgctactgcaaatatccttccccttaaaaaagtcctgcaatagctgctgcactttgagaa 7878141  T
Q  351 tccttgttgatccaccaacaagaacaacttcat 383  Q
    |||| | ||||||||||||||| ||||| ||||    
T  7878140 tcctagatgatccaccaacaagtacaacatcat 7878108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 8581361 - 8581493
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 350  Q
    |||| ||||||||||||||||||||| ||||||||||| || |||||||| |  || ||||| | ||| || ||||| || ||||||   ||||| ||||    
T  8581361 tgaatagcagcaccataagcaacagcctcatcagggttgatgctcttgcataattccttcccctggaaaaactcctgtaatagctgtctcactttaggaa 8581460  T
Q  351 tccttgttgatccaccaacaagaacaacttcat 383  Q
    |||| |  || ||||||||||| ||||| ||||    
T  8581461 tcctagaagaaccaccaacaaggacaacatcat 8581493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 288
Target Start/End: Original strand, 8537700 - 8537734
Alignment:
Q  254 acagcagcaccataagcaacagcttcatcagggtt 288  Q
    |||||||||||||||||||||||||||||||||||    
T  8537700 acagcagcaccataagcaacagcttcatcagggtt 8537734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Original strand, 8545297 - 8545343
Alignment:
Q  254 acagcagcaccataagcaacagcttcatcagggttaatactcttgca 300  Q
    ||||| ||||||||||||||||| |||||||||||||| ||||||||    
T  8545297 acagctgcaccataagcaacagcctcatcagggttaatgctcttgca 8545343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 383
Target Start/End: Original strand, 8575984 - 8576119
Alignment:
Q  248 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 347  Q
    ||||| ||| ||||||||||||||||||| ||||||||||| || ||||| || |  || ||||| ||||| |  ||||| || ||||||   ||||| |    
T  8575984 gcttggacaacagcaccataagcaacagcctcatcagggttgatgctcttacataattccttccccttgaaaacctcctgtaatagctgtctcactttag 8576083  T
Q  348 gaatccttgttgatccaccaacaagaacaacttcat 383  Q
    ||||||| |  || ||||||||||| ||||| ||||    
T  8576084 gaatcctagaagaaccaccaacaaggacaacatcat 8576119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 248 - 383
Target Start/End: Original strand, 8590296 - 8590431
Alignment:
Q  248 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 347  Q
    ||||||||||| ||||||||||||||||| ||||| || || || || ||| |||| || |||||  | || || || ||||| ||||| || ||||| |    
T  8590296 gcttgaacagctgcaccataagcaacagcctcatctggattgatgctattgtaaagatccttccccataaaaaagtcttgcaatagctgctgcactttgg 8590395  T
Q  348 gaatccttgttgatccaccaacaagaacaacttcat 383  Q
    ||||||| |  || ||||||||||| ||||| ||||    
T  8590396 gaatcctagaagaaccaccaacaagtacaacatcat 8590431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 248 - 298
Target Start/End: Original strand, 8659021 - 8659071
Alignment:
Q  248 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttg 298  Q
    ||||||| ||| ||||||||||||||||| ||||| ||||| |||||||||    
T  8659021 gcttgaagagctgcaccataagcaacagcctcatctgggttgatactcttg 8659071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 10494896 - 10494839
Alignment:
Q  236 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 293  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  10494896 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 10494839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 293
Target Start/End: Complemental strand, 13333890 - 13333833
Alignment:
Q  236 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatac 293  Q
    |||||||| || || |||||||| ||||||||||||||||| ||||| ||||| ||||    
T  13333890 ctcaaaatagcagcctgaacagctgcaccataagcaacagcctcatctgggttgatac 13333833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 383
Target Start/End: Complemental strand, 27831379 - 27831250
Alignment:
Q  254 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcc 353  Q
    ||||| |||||| |||||||||| |||||||| || || |||||||| |  || || || ||||| || |||  ||| ||||| || ||||| |||||||    
T  27831379 acagctgcaccaaaagcaacagcctcatcaggattgatgctcttgcacaaatcctttcccttgaaaaagtccgccaatagctgctgcactttgggaatcc 27831280  T
Q  354 ttgttgatccaccaacaagaacaacttcat 383  Q
    |||  || ||||||||||| ||||| ||||    
T  27831279 ttgaagagccaccaacaaggacaacatcat 27831250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 351
Target Start/End: Complemental strand, 29582345 - 29582248
Alignment:
Q  254 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 351  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||| |  || ||||| ||||| || || ||||| ||||| || ||||| |||||    
T  29582345 acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaaatccttccccttgaaaaattcttgcaatagctgatgcactttgggaat 29582248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 248 - 377
Target Start/End: Complemental strand, 12245916 - 12245787
Alignment:
Q  248 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 347  Q
    ||||||||||| || |||||||||||||| || ||||||||||| |||||||| |  || ||||| ||||| || ||||| || |||||||| ||||| |    
T  12245916 gcttgaacagctgccccataagcaacagcctcgtcagggttaatgctcttgcacaattccttcccgttgaaaaagtcctgtaatagctgttggactttgg 12245817  T
Q  348 gaatccttgttgatccaccaacaagaacaa 377  Q
    ||||||| |  |||||||||||||| ||||    
T  12245816 gaatcctagaagatccaccaacaagtacaa 12245787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 248 - 383
Target Start/End: Original strand, 11999066 - 11999200
Alignment:
Q  248 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttg 347  Q
    ||||||||||| || |||||||| ||||| |||||||||||||| |||||||| | ||| ||||| ||||| || || || || |||||||| || ||||    
T  11999066 gcttgaacagctgccccataagctacagcctcatcagggttaatgctcttgcacaactccttcccgttgaaaaagtcatgtaatagctgttggac-tttg 11999164  T
Q  348 gaatccttgttgatccaccaacaagaacaacttcat 383  Q
    | ||||| |  |||||||||||||| ||||| ||||    
T  11999165 ggatcctagaagatccaccaacaagtacaacatcat 11999200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 383
Target Start/End: Original strand, 12234351 - 12234482
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 350  Q
    |||||||| ||  |||||||||| || || |||||||||||||||||||| ||||| ||||| ||||| ||||||||||| || || || ||||| ||||    
T  12234351 tgaacagctgcctcataagcaaccgcctc-tcagggttaatactcttgcacagctccttccccttgaaaaaatcctgcaatagttgctgcactttgggaa 12234449  T
Q  351 tccttgttgatccaccaacaagaacaacttcat 383  Q
    |||| |  || || |||| ||| ||||||||||    
T  12234450 tcctagaggacccgccaataaggacaacttcat 12234482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 236 - 383
Target Start/End: Complemental strand, 16658039 - 16657892
Alignment:
Q  236 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagct 335  Q
    |||||||| || ||||||||||| ||||| ||||||||||||||||| ||||| ||||| ||||| |  || || || ||||| || || ||||| || |    
T  16658039 ctcaaaatagcagcttgaacagctgcaccgtaagcaacagcttcatccgggttgatacttttgcataaatccttgcccttgaaaaagtcttgcaatagat 16657940  T
Q  336 gttgaacttttggaatccttgttgatccaccaacaagaacaacttcat 383  Q
      || ||||| |||||||| | ||| ||||| ||||||||||| ||||    
T  16657939 cctgcactttgggaatcctagatgagccacccacaagaacaacgtcat 16657892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 248 - 321
Target Start/End: Complemental strand, 16662502 - 16662429
Alignment:
Q  248 gcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaa 321  Q
    ||||| ||||| || |||||||||||||| ||||||||||| || |||||||| | ||| ||||||||||||||    
T  16662502 gcttgcacagctgccccataagcaacagcctcatcagggttgatgctcttgcacaactccttcccattgaagaa 16662429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 245 - 309
Target Start/End: Complemental strand, 5446282 - 5446218
Alignment:
Q  245 gctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctcttt 309  Q
    |||||||||||||| || |||||||| |||||||||||||| ||||| || |||||| |||||||    
T  5446282 gctgcttgaacagcggcgccataagccacagcttcatcaggattaatgcttttgcaaggctcttt 5446218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 257 - 357
Target Start/End: Complemental strand, 17648542 - 17648442
Alignment:
Q  257 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttg 356  Q
    ||||||||||| |||||||| ||||| || ||||| || ||||| ||||| || || |  |||||||||||||| || |||||||| |||||||| ||||    
T  17648542 gcagcaccatatgcaacagcctcatcgggattaatgctattgcatagctcctttccgtcaaagaaatcctgcaatagttgttgaacctttggaattcttg 17648443  T
Q  357 t 357  Q
    |    
T  17648442 t 17648442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 260 - 384
Target Start/End: Complemental strand, 17717185 - 17717061
Alignment:
Q  260 gcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttgttg 359  Q
    |||||||| |||||||| ||||| || ||||| |||||||| ||||| || |  || |||||||||||||| || |||||||| |||||||| || || |    
T  17717185 gcaccatatgcaacagcctcatcgggattaatgctcttgcatagctcctttctgttaaagaaatcctgcaatagttgttgaacctttggaattctggtag 17717086  T
Q  360 atccaccaacaagaacaacttcatg 384  Q
    | || || ||||| ||||| |||||    
T  17717085 aacctcctacaaggacaacatcatg 17717061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 351
Target Start/End: Original strand, 43625058 - 43625173
Alignment:
Q  236 ctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagct 335  Q
    |||||||| || || || ||||| ||||||||||||||||| ||||||||||| || || | |||    || ||||| ||||| || |||||||| ||||    
T  43625058 ctcaaaatagcagcctggacagctgcaccataagcaacagcctcatcagggtttatgctttcgcatgattccttccccttgaaaaactcctgcaacagct 43625157  T
Q  336 gttgaacttttggaat 351  Q
    |||  |||||||||||    
T  43625158 gttttacttttggaat 43625173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 459
Target Start/End: Complemental strand, 17667184 - 17666982
Alignment:
Q  257 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatccttg 356  Q
    |||||||||||  ||||||| || |  || ||||| || ||||| ||||| || || || |||||||||||||| |  |||||||| |||||||| || |    
T  17667184 gcagcaccatacacaacagcctcgttgggattaatgctattgcatagctcctttccgttaaagaaatcctgcaataattgttgaacctttggaattctgg 17667085  T
Q  357 ttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatcccttagacacttctcaacaggttccatacatttcctaaacaaatc 456  Q
    | || || || ||||| ||||| ||||| |||   || || || ||||||||||  || | ||| ||||||||  | ||||||||||||||||| | |||    
T  17667084 tagaacctcctacaaggacaacatcatggacacttcttttgtccatcttagcatttctcaaacatttctcaacttgctccatacatttcctaaagagatc 17666985  T
Q  457 cat 459  Q
    |||    
T  17666984 cat 17666982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 351
Target Start/End: Complemental strand, 17718452 - 17718358
Alignment:
Q  257 gcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaat 351  Q
    ||||||||||| |||||||| ||||| || ||||| |||||||| || || || || || |||| ||||||| | || |||||||| ||||||||    
T  17718452 gcagcaccatatgcaacagcctcatcgggattaatgctcttgcatagatcctttccgttaaagacatcctgccatagttgttgaacctttggaat 17718358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 7541887 - 7541936
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 300  Q
    |||||||| || |||||||||||||| |||||||| ||||| ||||||||    
T  7541887 tgaacagctgccccataagcaacagcctcatcaggattaatgctcttgca 7541936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 251 - 300
Target Start/End: Original strand, 14703069 - 14703118
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 300  Q
    |||||||| || |||||||| |||||||||||||||||||| || |||||    
T  14703069 tgaacagctgccccataagctacagcttcatcagggttaatgctgttgca 14703118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 251 - 411
Target Start/End: Original strand, 12528165 - 12528325
Alignment:
Q  251 tgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaa 350  Q
    |||||||| ||||||||||||||||| ||||||||||| || |||||| | | ||| || || ||||| || |||||||| ||||| |  ||||| ||||    
T  12528165 tgaacagcggcaccataagcaacagcctcatcagggttgatgctcttgtataactccttgcccttgaaaaactcctgcaatagctgcttcactttgggaa 12528264  T
Q  351 tccttgttgatccaccaacaagaacaacttcatgaacatgactcttatcaatcttagcatc 411  Q
    |||| |  || ||||||||||| ||||  ||||  |||  |||||| || |||||||||||    
T  12528265 tcctagacgagccaccaacaagtacaatatcatctacactactcttgtccatcttagcatc 12528325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 377
Target Start/End: Complemental strand, 42325309 - 42325181
Alignment:
Q  249 cttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttgg 348  Q
    |||| |||||||||||| | ||||| |||||||||||||| |  | ||||    |||| || ||||  ||| |||||| |||||| ||||| || |||||    
T  42325309 cttgcacagcagcaccaaaggcaactgcttcatcagggttgacgcccttgtttggctcctttccatcaaagtaatccttcaaaagttgttgtacctttgg 42325210  T
Q  349 aatccttgttgatccaccaacaagaacaa 377  Q
    |||||||||   |||||||||||||||||    
T  42325209 aatccttgtgcttccaccaacaagaacaa 42325181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 384
Target Start/End: Original strand, 43744549 - 43744610
Alignment:
Q  323 tcctgcaaaagctgttgaacttttggaatccttgttgatccaccaacaagaacaacttcatg 384  Q
    |||||||| || ||||| |||||||||||||| |  || ||||||||||||||||| |||||    
T  43744549 tcctgcaatagttgttgtacttttggaatcctagaggagccaccaacaagaacaacatcatg 43744610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 300
Target Start/End: Complemental strand, 4679081 - 4679015
Alignment:
Q  234 cgctcaaaatcgctgcttgaacagcagcaccataagcaacagcttcatcagggttaatactcttgca 300  Q
    |||||||||| || ||||| | ||| ||||||||||||||||| ||||| ||||| |||||||||||    
T  4679081 cgctcaaaatagcagcttggatagctgcaccataagcaacagcctcatctgggttgatactcttgca 4679015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 371
Target Start/End: Original strand, 15594698 - 15594815
Alignment:
Q  254 acagcagcaccataagcaacagcttcatcagggttaatactcttgcaaagctctttcccattgaagaaatcctgcaaaagctgttgaacttttggaatcc 353  Q
    ||||| ||||||||||||||||| ||||||||||| || ||| |||| |  || || || | ||| ||||||| ||| || ||||| ||||| |||||||    
T  15594698 acagctgcaccataagcaacagcctcatcagggttgatgctcatgcacaattcctttccctcgaaaaaatccttcaatagttgttgcactttgggaatcc 15594797  T
Q  354 ttgttgatccaccaacaa 371  Q
    | |  || ||||||||||    
T  15594798 tagaagacccaccaacaa 15594815  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 254 - 297
Target Start/End: Original strand, 28219582 - 28219625
Alignment:
Q  254 acagcagcaccataagcaacagcttcatcagggttaatactctt 297  Q
    ||||| ||||||||||||||||| |||||||||||||| |||||    
T  28219582 acagctgcaccataagcaacagcctcatcagggttaatgctctt 28219625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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