View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11724_low_9 (Length: 430)

Name: NF11724_low_9
Description: NF11724
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11724_low_9
NF11724_low_9
[»] chr8 (18 HSPs)
chr8 (253-430)||(44903198-44903375)
chr8 (78-235)||(44902999-44903158)
chr8 (1-76)||(37038477-37038554)
chr8 (1-67)||(504146-504213)
chr8 (1-67)||(5957838-5957905)
chr8 (1-67)||(12831055-12831122)
chr8 (1-67)||(14547930-14547997)
chr8 (3-79)||(40423970-40424048)
chr8 (1-76)||(44507112-44507189)
chr8 (11-67)||(32032733-32032789)
chr8 (253-317)||(44916680-44916744)
chr8 (1-67)||(10284656-10284723)
chr8 (1-67)||(15197341-15197408)
chr8 (1-67)||(23122622-23122689)
chr8 (6-67)||(10621117-10621179)
chr8 (6-67)||(15048212-15048273)
chr8 (3-67)||(1179967-1180032)
chr8 (8-67)||(20074966-20075026)
[»] chr5 (12 HSPs)
chr5 (1-78)||(2740270-2740349)
chr5 (1-67)||(13811660-13811727)
chr5 (6-67)||(15409640-15409702)
chr5 (1-67)||(18520909-18520976)
chr5 (5-67)||(35943921-35943984)
chr5 (1-67)||(40145415-40145482)
chr5 (2-67)||(28177783-28177849)
chr5 (2-79)||(6679693-6679772)
chr5 (1-67)||(31008996-31009063)
chr5 (5-67)||(35785207-35785270)
chr5 (1-77)||(41470441-41470519)
chr5 (1-75)||(36732967-36733043)
[»] chr2 (21 HSPs)
chr2 (1-75)||(38882839-38882914)
chr2 (1-67)||(13438351-13438418)
chr2 (3-67)||(19930847-19930912)
chr2 (1-76)||(32505673-32505750)
chr2 (1-75)||(10249407-10249483)
chr2 (5-67)||(4060693-4060756)
chr2 (1-78)||(7465760-7465839)
chr2 (1-67)||(28863463-28863530)
chr2 (3-75)||(9058479-9058553)
chr2 (2-67)||(28381681-28381747)
chr2 (1-75)||(33436125-33436201)
chr2 (8-67)||(40613934-40613994)
chr2 (1-67)||(17473028-17473095)
chr2 (1-67)||(27864712-27864779)
chr2 (5-67)||(40701486-40701549)
chr2 (6-67)||(2533132-2533193)
chr2 (1-76)||(5574513-5574590)
chr2 (11-67)||(45097770-45097827)
chr2 (1-75)||(20700814-20700890)
chr2 (1-75)||(30915462-30915538)
chr2 (8-67)||(42257201-42257261)
[»] chr7 (14 HSPs)
chr7 (1-84)||(7389379-7389464)
chr7 (1-76)||(36361938-36362015)
chr7 (1-75)||(19436212-19436288)
chr7 (1-67)||(3784003-3784070)
chr7 (1-76)||(3434560-3434637)
chr7 (1-76)||(36362024-36362101)
chr7 (1-67)||(19329850-19329917)
chr7 (1-79)||(38267035-38267115)
chr7 (1-75)||(40957706-40957782)
chr7 (1-67)||(12310914-12310979)
chr7 (1-75)||(8080408-8080484)
chr7 (8-67)||(18207188-18207248)
chr7 (8-67)||(26296652-26296712)
chr7 (1-75)||(38837216-38837292)
[»] chr4 (13 HSPs)
chr4 (1-75)||(50052453-50052529)
chr4 (1-67)||(41236355-41236422)
chr4 (1-75)||(480472-480548)
chr4 (1-75)||(29239885-29239961)
chr4 (1-75)||(42044392-42044468)
chr4 (10-67)||(31910200-31910258)
chr4 (1-79)||(11511487-11511567)
chr4 (1-75)||(48183074-48183150)
chr4 (1-67)||(3481662-3481729)
chr4 (1-67)||(6034052-6034119)
chr4 (1-67)||(50526196-50526263)
chr4 (1-67)||(54473558-54473625)
chr4 (1-75)||(23608234-23608310)
[»] chr3 (14 HSPs)
chr3 (8-67)||(11347954-11348014)
chr3 (1-86)||(11095378-11095465)
chr3 (1-75)||(49607413-49607489)
chr3 (1-67)||(52629308-52629375)
chr3 (1-67)||(53982019-53982086)
chr3 (1-37)||(9563038-9563074)
chr3 (5-75)||(36707453-36707525)
chr3 (5-75)||(54868924-54868996)
chr3 (1-67)||(33118876-33118943)
chr3 (1-67)||(33644208-33644275)
chr3 (8-74)||(39670012-39670079)
chr3 (2-67)||(26141558-26141624)
chr3 (1-76)||(17470403-17470480)
chr3 (8-67)||(51419392-51419452)
[»] chr1 (17 HSPs)
chr1 (1-79)||(48716307-48716387)
chr1 (1-78)||(51898708-51898787)
chr1 (1-75)||(2581914-2581990)
chr1 (1-75)||(38632346-38632422)
chr1 (1-67)||(9474901-9474968)
chr1 (1-67)||(27564760-27564827)
chr1 (1-67)||(37649206-37649273)
chr1 (6-63)||(49811557-49811615)
chr1 (1-67)||(43140-43207)
chr1 (1-67)||(3000327-3000394)
chr1 (1-67)||(26274440-26274507)
chr1 (1-67)||(44548401-44548468)
chr1 (2-67)||(32813255-32813321)
chr1 (1-77)||(50630455-50630533)
chr1 (7-67)||(3302564-3302625)
chr1 (1-75)||(8346413-8346489)
chr1 (1-37)||(38595193-38595229)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-67)||(10134-10201)
[»] chr6 (12 HSPs)
chr6 (1-67)||(17598562-17598629)
chr6 (1-63)||(31109425-31109488)
chr6 (1-67)||(32869686-32869753)
chr6 (2-67)||(31976256-31976322)
chr6 (1-76)||(11427614-11427693)
chr6 (1-75)||(15832576-15832652)
chr6 (11-76)||(22422053-22422120)
chr6 (1-67)||(22880683-22880750)
chr6 (8-75)||(12732481-12732550)
chr6 (1-75)||(6209490-6209566)
chr6 (8-67)||(9379744-9379804)
chr6 (1-37)||(23128152-23128188)
[»] scaffold1268 (1 HSPs)
scaffold1268 (1-67)||(954-1021)
[»] scaffold1267 (1 HSPs)
scaffold1267 (1-67)||(954-1021)


Alignment Details
Target: chr8 (Bit Score: 178; Significance: 7e-96; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 253 - 430
Target Start/End: Original strand, 44903198 - 44903375
Alignment:
Q  253 gcctcgctgcttctatttatacaccttctattacccgtgaacctttaacctggtcgatgtgggacaaatacaagttccagttttaactttcaatacacgc 352  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44903198 gcctcgctgcttctatttatacaccttctattacccgtgaacctttaacctggtcgatgtgggacaaatacaagttccagttttaactttcaatacacgc 44903297  T
Q  353 aagtctcaaaaaacctatgcttctaatcaccgaaactgaatacaataaaaatacaatacttgatagcaacaaattatt 430  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44903298 aagtctcaaaaaacctatgcttctaatcaccgaaactgaatacaataaaaatacaatacttgatagcaacaaattatt 44903375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 44902999 - 44903158
Alignment:
Q  78 aattaattaa-aaaataagaccaaaattcattttaaatcaagggcagtttggtaaaacatataagtgtcatagagccaactaattcaagctcagctgaat 176  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  44902999 aattaattaagaaaataagatcaaaattcattttaaatcaagggcaggttggtaaaacatataaatgtcatagagccaactaattcaagctcaactgaat 44903098  T
Q  177 gaaaaaataaaatgcaccgacttgaggacact-atccatattacaatcctagttttcatg 235  Q
    ||| |||||||||||||||||||||||||||| ||| ||||| | | |||||||||||||    
T  44903099 gaacaaataaaatgcaccgacttgaggacactgatctatattgccaacctagttttcatg 44903158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 37038554 - 37038477
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||| ||||||||||||| |||||||||    
T  37038554 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactcta 37038477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 504146 - 504213
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| |||||||||||    
T  504146 cgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 504213  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 5957905 - 5957838
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| |||||||| ||||||||||||    
T  5957905 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagaatgtctatgtat 5957838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12831122 - 12831055
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  12831122 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtat 12831055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 14547997 - 14547930
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  14547997 cgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaagggtgtctatgtat 14547930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 79
Target Start/End: Original strand, 40423970 - 40424048
Alignment:
Q  3 tgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaaa 79  Q
    |||||||||||||||||||||| ||||||||||| | | ||||| ||||||||| | ||||||||| ||||||| ||||    
T  40423970 tgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtatctatgtatcattactcaaaaa 40424048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 44507112 - 44507189
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| ||| ||||| | ||||  ||||||||| ||||||||||| |||||||||    
T  44507112 cgtgactacgtgtcagatttttgtgtgggtgttaaagagtgtattaccacctaagggtgtctatgtatcattactcta 44507189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Complemental strand, 32032789 - 32032733
Alignment:
Q  11 tgtcagatttttgtatggatgtcaaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||| |||||||||| ||| ||||| ||||||||| ||| |||||||    
T  32032789 tgtcagatttttgtgtggatgtcaaggatgtattgccacctaagggtgtttatgtat 32032733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 317
Target Start/End: Original strand, 44916680 - 44916744
Alignment:
Q  253 gcctcgctgcttctatttatacaccttctattacccgtgaacctttaacctggtcgatgtgggac 317  Q
    |||||||||||| |||||||| ||  ||||| || ||| ||| ||||||||||||||||||||||    
T  44916680 gcctcgctgcttttatttatatacactctatcactcgtcaacatttaacctggtcgatgtgggac 44916744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10284656 - 10284723
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||| |||||||| ||| ||||||||| | ||||| ||| ||||| |||||||||||    
T  10284656 cgtgactacgtgtcaaatttttgtgtgggtgtcaaagagtgtattgtcacttaagggtgtctatgtat 10284723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 15197408 - 15197341
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||  |||||||||||    
T  15197408 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtat 15197341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 23122622 - 23122689
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| |||| |||| | ||||| ||| ||||| |||||||||||    
T  23122622 cgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacttaagggtgtctatgtat 23122689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 10621117 - 10621179
Alignment:
Q  6 ctacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||||| ||| ||||||| | | ||||  |||||||||||||||||||||    
T  10621117 ctacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaaggatgtctatgtat 10621179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 15048212 - 15048273
Alignment:
Q  6 ctacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||||| ||| ||||||||  | ||||| |||||||||||||||||||||    
T  15048212 ctacgtgtcagatttttgtgtgg-tgtcaaagggtgtattgccacctaaggatgtctatgtat 15048273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 1179967 - 1180032
Alignment:
Q  3 tgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||| ||| ||||||| | | ||||  ||||||||| |||||||||||    
T  1179967 tgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattaccacctaagggtgtctatgtat 1180032  T

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Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 20074966 - 20075026
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    |||||||| |||||| | ||| ||||||||| | ||||| |||||||||||||||||||||    
T  20074966 acgtgtcacatttttatgtgggtgtcaaagagtgtattgccacctaaggatgtctatgtat 20075026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 78
Target Start/End: Complemental strand, 2740349 - 2740270
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaa 78  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||||||||||||||| |||||||||||    
T  2740349 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactctaaa 2740270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13811727 - 13811660
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||||||| |||||||||||    
T  13811727 cgtgactacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtat 13811660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 6 - 67
Target Start/End: Original strand, 15409640 - 15409702
Alignment:
Q  6 ctacgtgtcagatttttgtatggatgtcaaag-atatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||||| ||| |||||||| || ||||| |||||||||||||||||||||    
T  15409640 ctacgtgtcagatttttgtgtgggtgtcaaagaatgtattgtcacctaaggatgtctatgtat 15409702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 18520909 - 18520976
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  18520909 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 18520976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Original strand, 35943921 - 35943984
Alignment:
Q  5 actacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||| ||| ||||||| ||| ||||| ||||||||| |||||||||||    
T  35943921 actacgtgtcagatttttgtgtgggtgtcaaatgatgtattgccacctaagggtgtctatgtat 35943984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 40145482 - 40145415
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||||||| ||| | | ||||| ||||||||| |||||||||||    
T  40145482 cgtgactacgtgtcagatttttgtgtggatgttaaagggtgtattgccacctaagggtgtctatgtat 40145415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 28177849 - 28177783
Alignment:
Q  2 gtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||| ||||||||||||||||| ||| ||||||| | | ||||| |||||||||||||||||||||    
T  28177849 gtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtat 28177783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 2 - 79
Target Start/End: Complemental strand, 6679772 - 6679693
Alignment:
Q  2 gtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat-attactctaaaa 79  Q
    ||||| ||||||||||||||||| ||| |||| |||| | ||||| ||||||| ||||||||||||| || |||||||||    
T  6679772 gtgaccacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaagatgtctatgtatcataactctaaaa 6679693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 31009063 - 31008996
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaag-atatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| |||  ||| || ||||| ||||||||||||| |||||||    
T  31009063 cgtgactacgtgtcagatttttgtgtgggtgtggaagaatgtattgtcacctaaggatgtttatgtat 31008996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 35785270 - 35785207
Alignment:
Q  5 actacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| |||||||||||    
T  35785270 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 35785207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 41470441 - 41470519
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgta-tattactctaa 77  Q
    |||||||||||||||||||||| |||| || | ||| ||| ||||| ||||||| | |||||||||| |||||||||||    
T  41470441 cgtgactacgtgtcagatttttatatgaattttaaaggatgtattgccacctaaaggtgtctatgtattattactctaa 41470519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 36732967 - 36733043
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||| ||||||||||||||| ||| ||||||| | | |||||  |||||||| ||||||||||| ||||||||    
T  36732967 cgtgactatgtgtcagatttttgtgtgggtgtcaaagggtgtattgctacctaagggtgtctatgtatcattactct 36733043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 7e-16; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38882839 - 38882914
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||||||||||||   ||||| ||||||||| ||||||||||| ||||||||    
T  38882839 cgtgactacgtgtcagatttttgtgtggatgtcaaagggttattgccacctaagggtgtctatgtatcattactct 38882914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 13438418 - 13438351
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||||||| |||||||||||    
T  13438418 cgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtcacctaagggtgtctatgtat 13438351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 3 - 67
Target Start/End: Original strand, 19930847 - 19930912
Alignment:
Q  3 tgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||| ||||||||||| | | ||||| ||||||||| |||||||||||    
T  19930847 tgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctatgtat 19930912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 32505673 - 32505750
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| ||||||||||| |||||||||    
T  32505673 cgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactcta 32505750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 10249407 - 10249483
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| ||||||||||| ||||||||    
T  10249407 cgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaagggtgtctatgtatcattactct 10249483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 4060756 - 4060693
Alignment:
Q  5 actacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||| |||||||| |||| | ||||| ||||||||| |||||||||||    
T  4060756 actacgtgtcagatttttgtgtggatgtcaaaaggtgtattgtcacctaagggtgtctatgtat 4060693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 7465760 - 7465839
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaa 78  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| || |||||| ||||||||||| |||||||||||    
T  7465760 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtatcattactctaaa 7465839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 28863530 - 28863463
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  28863530 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 28863463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 3 - 75
Target Start/End: Complemental strand, 9058553 - 9058479
Alignment:
Q  3 tgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  9058553 tgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 9058479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 28381681 - 28381747
Alignment:
Q  2 gtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| |||||||||||    
T  28381681 gtgactacgtgtcagatttttgtgtgggtgtcgaaaggtgtattgccacctaagggtgtctatgtat 28381747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 33436125 - 33436201
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    ||||||||||||| |||||||||| ||| ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  33436125 cgtgactacgtgttagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 33436201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 40613934 - 40613994
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||| ||| ||||||||  | ||||| |||||||||||||||||||||    
T  40613934 acgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtat 40613994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17473095 - 17473028
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| || |||||| |||||||||||    
T  17473095 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccatctaagggtgtctatgtat 17473028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 27864779 - 27864712
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||| |||||||||||||||||| ||||||||||| | | ||||| ||| ||||| |||||||||||    
T  27864779 cgtgattacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacataagggtgtctatgtat 27864712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 5 - 67
Target Start/End: Complemental strand, 40701549 - 40701486
Alignment:
Q  5 actacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| |||||||||||    
T  40701549 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtat 40701486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 6 - 67
Target Start/End: Complemental strand, 2533193 - 2533132
Alignment:
Q  6 ctacgtgtcagatttttgtatggatgtcaaag-atatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||||| ||| |||||||| || ||||| ||| |||||||||||||||||    
T  2533193 ctacgtgtcagatttttgtgtgg-tgtcaaaggatgtattgccacttaaggatgtctatgtat 2533132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 5574513 - 5574590
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||| | ||| ||||||| | | ||||| ||||||||  ||||||||||| |||||||||    
T  5574513 cgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagagtgtctatgtatcattactcta 5574590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 67
Target Start/End: Original strand, 45097770 - 45097827
Alignment:
Q  11 tgtcagatttttgtatggatgtcaa-agatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||| ||||||  ||| ||||| ||||||||||||| |||||||    
T  45097770 tgtcagatttttgtatgggtgtcaagggatgtattgccacctaaggatgtttatgtat 45097827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 20700890 - 20700814
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| | |  |||||| | | ||||| ||| ||||||||||||||||| ||||||||    
T  20700890 cgtgactacgtgtcagatttttgtgtaggagtcaaagggtgtattgccacataaggatgtctatgtatcattactct 20700814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 30915538 - 30915462
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||| | |||  |||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  30915538 cgtgactacgtgtcagatttttatgtgggggtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 30915462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 42257261 - 42257201
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||| | ||| ||||||| ||| ||||| ||||||| |||||||||||||    
T  42257261 acgtgtcagatttttatgtgggtgtcaaatgatgtattgccacctaaagatgtctatgtat 42257201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 7389464 - 7389379
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat-attactctaaaattaat 84  Q
    |||||||||||||||||||||||| ||| ||||||||| | ||||| ||||||||| ||||||||||| |||||||| ||| ||||    
T  7389464 cgtgactacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaagggtgtctatgtatcattactcttaaaataat 7389379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 1 - 76
Target Start/End: Original strand, 36361938 - 36362015
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||||||| ||||||||||| |||||||||    
T  36361938 cgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagggtgtctatgtatcattactcta 36362015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 19436212 - 19436288
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||||||||||||||| ||||||||    
T  19436212 cgtgactacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgtcacctaaggatgtctatgtatcattactct 19436288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3784070 - 3784003
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| |||| |||||| ||||| ||||||||| |||||||||||    
T  3784070 cgtgactacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtat 3784003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 3434637 - 3434560
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||| ||||||| ||| ||||||| | | ||||| ||||||||||||||||||||| |||||||||    
T  3434637 cgtgactacgtgtcagttttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactcta 3434560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 36362101 - 36362024
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||||  ||||||||| ||||||||||| |||||||||    
T  36362101 cgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattaccacctaagggtgtctatgtatcattactcta 36362024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 19329917 - 19329850
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    ||||| |||||||||||||||||| ||| |||| |||| | ||||| |||||||||||||||||||||    
T  19329917 cgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtat 19329850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 38267115 - 38267035
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaaa 79  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||| ||||| ||||||||||| ||||||| ||||    
T  38267115 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacataagggtgtctatgtatcattactcaaaaa 38267035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 40957782 - 40957706
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| | ||||||| | ||||| ||||||||  ||||||||||| ||||||||    
T  40957782 cgtgactacgtgtcagatttttgtgtgggtatcaaagagtgtattgccacctaagagtgtctatgtatcattactct 40957706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 12310979 - 12310914
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||| || |||||||||||||||||||| ||  |||||||||  ||||||||| |||||||||||    
T  12310979 cgtgaccacatgtcagatttttgtatggatatc-cagatatatttccacctaagggtgtctatgtat 12310914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8080408 - 8080484
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||| | | | ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  8080408 cgtgactacgtgtcagatttttatgtaggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 8080484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 18207248 - 18207188
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaa-agatatattgacacctaaggatgtctatgtat 67  Q
    |||||| |||||||||||||| |||||| || | ||||| ||||||||| |||||||||||    
T  18207248 acgtgttagatttttgtatgggtgtcaagaggtgtattgccacctaaggttgtctatgtat 18207188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Complemental strand, 26296712 - 26296652
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    |||| |||||||||| | ||||||| ||||  ||||||| |||||||||||||||||||||    
T  26296712 acgtatcagatttttatgtggatgttaaagggtatattgtcacctaaggatgtctatgtat 26296652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 38837292 - 38837216
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgt-caaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| | | ||| ||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  38837292 cgtgactacgtgtcagatttttgtgtaggtgtacaagggtgtattgccacctaagggtgtctatgtatcattactct 38837216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 50052453 - 50052529
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||||||||||||||| ||||||||    
T  50052453 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaggatgtctatgtatcattactct 50052529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 41236422 - 41236355
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| |||||||| |||| | ||||| ||||||||| |||||||||||    
T  41236422 cgtgactacgtgtcagatttttgtgtggatgtcaaaaggtgtattgccacctaagggtgtctatgtat 41236355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 480472 - 480548
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  480472 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtatcattactct 480548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 29239961 - 29239885
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    ||||||||||||| |||||||||| ||||||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  29239961 cgtgactacgtgttagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactct 29239885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 42044392 - 42044468
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgt-caaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||| ||| ||| ||||| ||||||||| ||||||||||| ||||||||    
T  42044392 cgtgactacgtgtcagatttttgtgtgggtgtacaaggatgtattgccacctaagggtgtctatgtatcattactct 42044468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 31910258 - 31910200
Alignment:
Q  10 gtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||| ||| ||||||||| | ||||| |||||||||||||||||||||    
T  31910258 gtgtcagatttttgtgtgggtgtcaaagagtgtattgtcacctaaggatgtctatgtat 31910200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 11511487 - 11511567
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaaa 79  Q
    |||||||||||||||||||||| | ||| ||||||| | | ||||| ||||||||| ||||||||||| ||||||| ||||    
T  11511487 cgtgactacgtgtcagatttttatgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcaaaaa 11511567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 48183074 - 48183150
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||| ||||| ||||||||||| ||||||||    
T  48183074 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacgtaagggtgtctatgtatcattactct 48183150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3481729 - 3481662
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    |||||||| ||||||||||||||| ||| ||||||||| | ||||| ||||||| | |||||||||||    
T  3481729 cgtgactatgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaaggtgtctatgtat 3481662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 6034119 - 6034052
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||| |||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  6034119 cgtgactacatgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 6034052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 50526196 - 50526263
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||| ||||||||||||||||| ||| ||||||| | | ||||| ||||||| |||||||||||||    
T  50526196 cgtgaccacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtat 50526263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 54473558 - 54473625
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||| |||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  54473558 cgtgactacgtgttagatttttgtgtgggtgtcaaatggtgtattgtcacctaagggtgtctatgtat 54473625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 23608310 - 23608234
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| || |||||| ||||||| ||| ||||||||    
T  23608310 cgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgtcatctaagggtgtctatatatcattactct 23608234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 11347954 - 11348014
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||| ||||||||||| ||| ||||| |||||||||||||||||||||    
T  11347954 acgtgtcagatttttgtgtggatgtcaaaggatgtattgtcacctaaggatgtctatgtat 11348014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 86
Target Start/End: Original strand, 11095378 - 11095465
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaaattaatta 86  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| ||||||||||| |||||||| || |||||||    
T  11095378 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactcttaatttaatta 11095465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 49607489 - 49607413
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  49607489 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 49607413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 52629375 - 52629308
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  52629375 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 52629308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 53982086 - 53982019
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  53982086 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 53982019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9563074 - 9563038
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaag 37  Q
    |||||||||||||||||||||| ||||||||||||||    
T  9563074 cgtgactacgtgtcagatttttatatggatgtcaaag 9563038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 36707453 - 36707525
Alignment:
Q  5 actacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||| ||||||||||| | | ||||| ||||||||| | ||||||||| ||||||||    
T  36707453 actacgtgtcagatttttgtgtggatgtcaaagggtgtattgtcacctaagggtatctatgtatcattactct 36707525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 75
Target Start/End: Original strand, 54868924 - 54868996
Alignment:
Q  5 actacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||| ||| |||| |||| | ||||| ||||||||| ||||||||||| ||||||||    
T  54868924 actacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaagggtgtctatgtatcattactct 54868996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 33118876 - 33118943
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||| |||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  33118876 cgtgactacgtgtcaaatttttgtgtgggtgtcaaagggtgtattgtcacctaagggtgtctatgtat 33118943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 33644275 - 33644208
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| |||| |||| |||||||||||    
T  33644275 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacccaagggtgtctatgtat 33644208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 39670079 - 39670012
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaag-atatattgacacctaaggatgtctatgtatattactc 74  Q
    |||||||| |||||| ||| |||||||| | |||||||| ||| ||||||||||||||||||| ||||    
T  39670079 acgtgtcaaatttttatatagatgtcaagggatatattgccacataaggatgtctatgtatataactc 39670012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Original strand, 26141558 - 26141624
Alignment:
Q  2 gtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||| ||||||||||||||||| ||| ||| ||||  | ||||| |||||||||||||||||||||    
T  26141558 gtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtat 26141624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 17470480 - 17470403
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatg-tcaaagatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| || | |||| | ||||| ||||||| | ||||||||||| |||||||||    
T  17470480 cgtgactacgtgtcagatttttgtgtgggtgttaaaaggtgtattgccacctaaaggtgtctatgtatcattactcta 17470403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 51419392 - 51419452
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaag-atatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||| ||| ||| |||| || ||||| || ||||||||||||||||||    
T  51419392 acgtgtcagatttttgtgtgggtgttaaaggatgtattgtcatctaaggatgtctatgtat 51419452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 1 - 79
Target Start/End: Original strand, 48716307 - 48716387
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaaa 79  Q
    |||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||| ||||||||||| ||||||| ||||    
T  48716307 cgtgactacgtgtcagatttttgtgtggatgtcaaatggtgtattgccacctaagggtgtctatgtatcattactcaaaaa 48716387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 51898708 - 51898787
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaaa 78  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||| ||||||||||||| |||||||||||    
T  51898708 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaaagatgtctatgtatcattactctaaa 51898787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 2581990 - 2581914
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  2581990 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtatcattactct 2581914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 38632346 - 38632422
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatg-tcaaagatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| |||||| | |||| | ||||| ||||||||| ||||||||||| ||||||||    
T  38632346 cgtgactacgtgtcagatttttgtgtggatgttaaaaggtgtattgccacctaagggtgtctatgtatcattactct 38632422  T

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Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 9474901 - 9474968
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  9474901 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 9474968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 27564760 - 27564827
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    ||||| |||||||||||||||||| ||| |||| |||| | ||||| |||||||||||||||||||||    
T  27564760 cgtgattacgtgtcagatttttgtgtgggtgtcaaaaggtgtattgccacctaaggatgtctatgtat 27564827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 37649273 - 37649206
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    |||||| ||||||||||||||||| ||| ||||||||| | ||||| ||||||| |||||||||||||    
T  37649273 cgtgaccacgtgtcagatttttgtgtgggtgtcaaagagtgtattgccacctaaagatgtctatgtat 37649206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 6 - 63
Target Start/End: Original strand, 49811557 - 49811615
Alignment:
Q  6 ctacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctat 63  Q
    ||||||||||||||||||| ||||||||||| | | ||||| |||||||||||||||||    
T  49811557 ctacgtgtcagatttttgtgtggatgtcaaatggtgtattgtcacctaaggatgtctat 49811615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 43207 - 43140
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||||| | ||||||  |||||||||||    
T  43207 cgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgtctcctaagactgtctatgtat 43140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 3000394 - 3000327
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| ||| |||||||    
T  3000394 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtttatgtat 3000327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 26274507 - 26274440
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||| ||||||||||||| | ||||||||||| ||| ||||| ||| ||||| |||||||||||    
T  26274507 cgtgactatgtgtcagatttttctgtggatgtcaaatgatgtattgccacataagggtgtctatgtat 26274440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 44548401 - 44548468
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| | ||||| | | ||||| ||||||| |||||||||||||    
T  44548401 cgtgactacgtgtcagatttttgtgtgggtatcaaatggtgtattgccacctaaagatgtctatgtat 44548468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 32813321 - 32813255
Alignment:
Q  2 gtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||| ||||||||||||||||| ||| ||| ||||  | ||||| |||||||||||||||||||||    
T  32813321 gtgaccacgtgtcagatttttgtgtgggtgttaaagggtgtattgccacctaaggatgtctatgtat 32813255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 77
Target Start/End: Complemental strand, 50630533 - 50630455
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactctaa 77  Q
    |||||||||||||||||||||||| ||| |  |||| ||| ||||| ||||||||| | ||||||||| ||||||||||    
T  50630533 cgtgactacgtgtcagatttttgtgtgggtaacaaaggatgtattgccacctaagggtatctatgtatcattactctaa 50630455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 7 - 67
Target Start/End: Original strand, 3302564 - 3302625
Alignment:
Q  7 tacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||| ||| |||| | || ||||||| ||||||||||||| |||||||    
T  3302564 tacgtgtcagatttttgtgtgggtgtccaggaatatattgtcacctaaggatgtatatgtat 3302625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 8346413 - 8346489
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||| | || |||||||| ||||||||    
T  8346413 cgtgactacgtgtcagatttttgtgtgggtgtcaaatggtgtattgccacctaaaggtgactatgtatcattactct 8346489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38595229 - 38595193
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaag 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  38595229 cgtgactacgtgtcagatttttgtgtgggtgtcaaag 38595193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 10134 - 10201
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||| | ||||||||||| ||| ||||| ||||||| | |||||||||||    
T  10134 cgtgactacgtgtcagatttttatgtggatgtcaaaggatgtattgccacctaaaggtgtctatgtat 10201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 17598629 - 17598562
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtc-aaagatatattgacacctaaggatgtctatgtat 67  Q
    |||||| ||||||||||||||||| ||| |||| |||||| ||||| ||||||||| |||||||||||    
T  17598629 cgtgacaacgtgtcagatttttgtgtgggtgtcaaaagatgtattgccacctaagggtgtctatgtat 17598562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 63
Target Start/End: Original strand, 31109425 - 31109488
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctat 63  Q
    |||||||||||||||||||||||| ||||||||||| | | ||||| ||||||||| |||||||    
T  31109425 cgtgactacgtgtcagatttttgtgtggatgtcaaagggtgtattgccacctaagggtgtctat 31109488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 67
Target Start/End: Complemental strand, 32869753 - 32869686
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||||||||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  32869753 cgtgactacgtgtcagatttttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 32869686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 67
Target Start/End: Complemental strand, 31976322 - 31976256
Alignment:
Q  2 gtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat 67  Q
    ||||| ||||||||||||||||| ||| ||| ||||  ||||||| |||||||||||||||||||||    
T  31976322 gtgaccacgtgtcagatttttgtgtgggtgttaaagggtatattgccacctaaggatgtctatgtat 31976256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 11427693 - 11427614
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacaccta--aggatgtctatgtat-attactcta 76  Q
    |||||||||||||||||||||||| ||| ||||||| ||| ||||| ||||||  ||| ||||||||||| |||||||||    
T  11427693 cgtgactacgtgtcagatttttgtgtgggtgtcaaaggatgtattgccacctaagagggtgtctatgtatcattactcta 11427614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 15832652 - 15832576
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat-attactct 75  Q
    ||||||||||||||| |||||||| ||| ||||||| ||| ||||| ||||||| | ||||||||||| ||||||||    
T  15832652 cgtgactacgtgtcaaatttttgtgtgggtgtcaaatgatttattgtcacctaaaggtgtctatgtatcattactct 15832576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 22422053 - 22422120
Alignment:
Q  11 tgtcagatttttgtatggatgtcaa-agatatattgacacctaaggatgtctatgtat-attactcta 76  Q
    ||||||| |||||||||  |||||| |||| ||||| ||||||||||||||||||||| |||||||||    
T  22422053 tgtcagaattttgtatgagtgtcaagagatctattgccacctaaggatgtctatgtatcattactcta 22422120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 22880683 - 22880750
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    ||||||||||||||||| |||||| ||| ||||||| | | ||||| ||||||||| |||||||||||    
T  22880683 cgtgactacgtgtcagaattttgtgtgggtgtcaaagggtgtattgccacctaagggtgtctatgtat 22880750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 8 - 75
Target Start/End: Complemental strand, 12732550 - 12732481
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat-attactct 75  Q
    ||||||||||||||||| ||| |||||| || ||||||| ||| |||| |||||||||||| ||||||||    
T  12732550 acgtgtcagatttttgtgtgggtgtcaatgattatattgccacttaagaatgtctatgtatcattactct 12732481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 6209490 - 6209566
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaaga-tatattgacacctaaggatgtctatgtat-attactct 75  Q
    |||||||||||| ||||||||||| ||  ||||||| | | ||||| ||||||||| ||||||||||| ||||||||    
T  6209490 cgtgactacgtgacagatttttgtgtgagtgtcaaatagtgtattgccacctaagggtgtctatgtatcattactct 6209566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 9379744 - 9379804
Alignment:
Q  8 acgtgtcagatttttgtatggatgtcaa-agatatattgacacctaaggatgtctatgtat 67  Q
    |||||||| |||||||||||| ||||||  ||| ||||| || ||||||||||||||||||    
T  9379744 acgtgtcaaatttttgtatgggtgtcaagggatgtattgtcatctaaggatgtctatgtat 9379804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23128152 - 23128188
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaag 37  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  23128152 cgtgactacgtgtcagatttttgtgtgggtgtcaaag 23128188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1268 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1268
Description:

Target: scaffold1268; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 954 - 1021
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||| ||||||| ||||||| ||| | | ||||| ||||||| |||||||||||||    
T  954 cgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtat 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1267 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold1267
Description:

Target: scaffold1267; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 954 - 1021
Alignment:
Q  1 cgtgactacgtgtcagatttttgtatggatgtcaaa-gatatattgacacctaaggatgtctatgtat 67  Q
    |||||||||||||||| ||||||| ||||||| ||| | | ||||| ||||||| |||||||||||||    
T  954 cgtgactacgtgtcagttttttgtgtggatgttaaagggtgtattgccacctaaagatgtctatgtat 1021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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