View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11725_high_4 (Length: 379)
Name: NF11725_high_4
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 21 - 368
Target Start/End: Complemental strand, 2522219 - 2521872
Alignment:
| Q |
21 |
gccgtccctaacaaaccatggaaattcaatgacctttttctattttaccaaattcatcgaaattgccttgtaaacagacctgaaaattataatttgttga |
120 |
Q |
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| T |
2522219 |
gccgtccctaacaaaccatggaaattcaatgacctttttctattttaccaaattcatcgaaattgccttgtaaacagacctgaaaattataatttgttga |
2522120 |
T |
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| Q |
121 |
ggctttactcctgaagttgtttggaagtctttaagcaactcactatagagtgaaacaacgtgacgaatcattagaaggcgagggagaaaacatttactcg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
2522119 |
ggctttactcctgaagttgtttggaagtctttaagcaactcactatagagtgaaacaacgtgacgaatcattagaaggtgagggagaaaacatttactcg |
2522020 |
T |
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| Q |
221 |
ttttgaattataaaaatatgaaagaataatgcaacaccttataaattctagtttgtagaaataatcacactcattagaaaacacgaacctgatgataccg |
320 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2522019 |
ttttgaattataaaaatatgaaagaataatgcaacaccttataaattctagtttgtagaaataatcacactcgttagaaaacacgaacctgatgataccg |
2521920 |
T |
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| Q |
321 |
tcatccttagtatcagaaacaggcttgaatagagactgaacgatctct |
368 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521919 |
tcatccttagtatcagaaacaggcttgaatagagactgaacgatctct |
2521872 |
T |
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