View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11725_high_6 (Length: 302)
Name: NF11725_high_6
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_high_6 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 5 - 289
Target Start/End: Original strand, 32515424 - 32515708
Alignment:
| Q |
5 |
cagacacgcttctaggtcgaacatttgtgaatgcaacgaggtcaccaacctcaggttcatattttccaacaccgtacacttcttcggtagtgttcttcaa |
104 |
Q |
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| T |
32515424 |
cagacacgcttctaggtcgaacatttgtgaatgcaacgaggtcaccaacctcaggttcatattttcctacaccgtacacttcttcggtagtgttcttcaa |
32515523 |
T |
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| Q |
105 |
tgtagtttgatagaacaaggcgtggggatagttgaagtctttggatatttccattgtcctgatttcgcaaaaagcttgaggaacattccacaagcttgaa |
204 |
Q |
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| T |
32515524 |
tgtagtttgatagaacaaggcgtggggatagttgaagtctttggatatttccattgtcctgatttcgcaaaaagcttgaggaacattccacaagcttgaa |
32515623 |
T |
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| Q |
205 |
gacagataactatgtgtttcctcaatcaatgcaggaaagaatgaattcacgtagtcatttgttgacatgaacgtctttggaatct |
289 |
Q |
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| T |
32515624 |
gacagataactatgtgtttcctcaatcaatgcaggaaagaatgaattcacgtagtcatttgttgagatgaacgtctttggaatct |
32515708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 13 - 289
Target Start/End: Complemental strand, 32542323 - 32542044
Alignment:
| Q |
13 |
cttctaggtcgaacatttgtgaatgcaacgaggtcaccaacctcaggttcatattttccaacaccgtacacttcttcggtagtgttcttcaatgtagttt |
112 |
Q |
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| T |
32542323 |
cttcttggtcgaatatttgtgaatgcaatgagatcaccaacctcaggttcatactttcctactccgtagacttcatcagtaatgttcttcaatgtaattt |
32542224 |
T |
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| Q |
113 |
gatagaacaaggcgtggggatagttgaagtctttggatatttccattgtcctgatttcgcaaaaag---cttgaggaacattccacaagcttgaagacag |
209 |
Q |
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| T |
32542223 |
tatagaacaagtcgtacggaggattgaagaccttcgatatttccattgttctgatttcacaaaaagaagctttaggcacactcatcaagcttgaatatag |
32542124 |
T |
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| Q |
210 |
ataactatgtgtttcctcaatcaatgcaggaaagaatgaattcacgtagtcatttgttgacatgaacgtctttggaatct |
289 |
Q |
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| T |
32542123 |
atcactatgtgtttcctcaatcaatgcaggaaagaatgaattcgtgtaatcatttgttgacaagaatgtcttcggaatct |
32542044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 194 - 241
Target Start/End: Original strand, 28858330 - 28858377
Alignment:
| Q |
194 |
acaagcttgaagacagataactatgtgtttcctcaatcaatgcaggaa |
241 |
Q |
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| T |
28858330 |
acaagcttgaagacagatcactatgagtttcctcaaccaatgaaggaa |
28858377 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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