View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11725_low_1 (Length: 577)
Name: NF11725_low_1
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 15 - 442
Target Start/End: Original strand, 2521367 - 2521794
Alignment:
| Q |
15 |
aaagggtatattggcgaatacctttcaggattttggcatacataatgtcagcgcctagagccttgtgcgagcacccaacgccctacatagtaattttttc |
114 |
Q |
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| T |
2521367 |
aaagggtatattggcgaatacccttcaggattttggcatacataatgtcagcgcctagagccttgtgcgagcacccaacgccctacatagtaattttttc |
2521466 |
T |
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| Q |
115 |
ttgtttttctgcagcgtatactcatctcgagtcatataatatgtctcctatgattccattattttggaaactactcacattttactttcgcttaacttat |
214 |
Q |
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| T |
2521467 |
ttgtttttctgcagcgtatactcatctcgagtcatataatatgtctcctatgattccattattctggaaactactcacattttactttcgcttaacttat |
2521566 |
T |
|
| Q |
215 |
ttcatgcagcttggtgggatgaattcctttttgttaactgaatttgagcattcgataccactgttttcaaaaatacctacattggttattggaatggatg |
314 |
Q |
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| T |
2521567 |
ttcatgcagcttggtgggatgaattcctttttgttaactgaatttaagcattcgataccactgttttcaaaaatacctacattggttattggaatggatg |
2521666 |
T |
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| Q |
315 |
tttcacatggatctcaaggtcaatcagaagcactatccattgctgcgatatggtataactttaggttttcatgtcactatatattaagtgtgatattaac |
414 |
Q |
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| T |
2521667 |
tttcacatggatctcaaggtcaatcagaagcactatccattgctgcggtatggtataactttaggttttcatgtcactatatattaagtgtgatattaac |
2521766 |
T |
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| Q |
415 |
cataagcacacaatgtttacctaatatt |
442 |
Q |
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| T |
2521767 |
cataagcacacaatgtttacctaatatt |
2521794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 473 - 577
Target Start/End: Original strand, 2521791 - 2521895
Alignment:
| Q |
473 |
tattattcaggttgtgagctcaagatgttggcctcaaatctctcgttacaaagctgtagtccgcactcagtcgtcaaaagtagagatcgttcagtctcta |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2521791 |
tattattcaggttgtgagctcaagatgttggcctcaaatctctcgttacaaagctgtagtccgcactcagtcgtcaaaagtagagatcgttcagtctcta |
2521890 |
T |
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| Q |
573 |
ttcaa |
577 |
Q |
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||||| |
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| T |
2521891 |
ttcaa |
2521895 |
T |
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