View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11725_low_2 (Length: 575)
Name: NF11725_low_2
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 19 - 569
Target Start/End: Complemental strand, 21328544 - 21327990
Alignment:
| Q |
19 |
gatttggtatagaaagttgataggatgaaactgcaaagtgcgttgaggtattgaggattgaagagttctagtcggagatttaggtgattgttactctaaa |
118 |
Q |
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| T |
21328544 |
gatttggtatagaaagttgataggatgaaactgcaaagtgcgttgaggtattgaggattgaagagttctggtcggagatttaggtgattgttactctaaa |
21328445 |
T |
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| Q |
119 |
gcagaaagcatcgcatttacaaaggaccacatgttgcttgtgaatcacatagcagtttggggttttaaggttattcctcttgcagcggcccctaggcgct |
218 |
Q |
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| T |
21328444 |
gcagaaagcatcacatttacaaaggaccacatgttgcttgtgaatcacatagcagtttggggttttaaggttatacctcttgtagcggcccctaggcgct |
21328345 |
T |
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| Q |
219 |
atgcaaaattccattgagttgtgtttttagtagcaattgtagctgacaaatggcggccaatagtgaaaattcgaatatgccatccaatgttgtcaaatag |
318 |
Q |
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| T |
21328344 |
atgcaaaattccgttgagttgtgtttttagtagcaattgtagctgacaaatggcggccaatagtgaaaattcgaatatgccatccaatgttgtcaaatag |
21328245 |
T |
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| Q |
319 |
aattatggggcatctcaggaaaatcattgttcgttacggatagagggtattttcctttgtaagagcttagcaccgtgtagggatattcattcatttgtat |
418 |
Q |
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| T |
21328244 |
aattatggggcatctcaggaaaatcattgttcgttacggatagagggcattttcctttgtaagagcttagcaccgtatagggatattcattcatttgtat |
21328145 |
T |
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| Q |
419 |
ctacgttctttcttgaaaccattcacttctagtattccattattgcagctatttcatgttatgtgttttttgtttgcatc----agcaacagttatttct |
514 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
21328144 |
ctacgttctttctagaaaccattcacttctagtattccattattgcagctatttcatgttatgtgttttttgtttgcatcagcgagcaacagttatttct |
21328045 |
T |
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| Q |
515 |
ttctgttattattagtaatagttatgttcattttgtaattgtttacattcattgt |
569 |
Q |
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| T |
21328044 |
ttctgttattattagtaatagttatgttcattttgtaattgtttacattcattgt |
21327990 |
T |
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