View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11725_low_3 (Length: 389)
Name: NF11725_low_3
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_low_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 343; Significance: 0; HSPs: 23)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 30751011 - 30750633
Alignment:
| Q |
1 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatg |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30751011 |
tcttgtcgactgagaggatgtacctctttcaaaccaaagaacatcatgtttcgccatgagattggtaacaggttaaaagagattacaaggaggttagatg |
30750912 |
T |
|
| Q |
101 |
atattgctgaaagtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750911 |
atattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattat |
30750812 |
T |
|
| Q |
201 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30750811 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
30750712 |
T |
|
| Q |
301 |
atagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30750711 |
atagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgacaattttg |
30750633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 30061737 - 30061359
Alignment:
| Q |
1 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30061737 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatg |
30061638 |
T |
|
| Q |
101 |
atattgctgaaagtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061637 |
atattgctgaaagtaagaacaagttttctctacagatgggtggcactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattat |
30061538 |
T |
|
| Q |
201 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30061537 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
30061438 |
T |
|
| Q |
301 |
atagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30061437 |
atagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttg |
30061359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 30337266 - 30337644
Alignment:
| Q |
1 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30337266 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttgaaagagattacaaggaggttagata |
30337365 |
T |
|
| Q |
101 |
atattgctgaaagtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattat |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30337366 |
atattgctgaacgtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctccattat |
30337465 |
T |
|
| Q |
201 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||| |
|
|
| T |
30337466 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgttgagtttcttctcacccaagcgaaggactctgacttcctttccgtctatccc |
30337565 |
T |
|
| Q |
301 |
atagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
30337566 |
atagttggtttaggtggtgttggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtggcaattttg |
30337644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 23 - 379
Target Start/End: Original strand, 30676051 - 30676407
Alignment:
| Q |
23 |
cctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa |
122 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30676051 |
cctctctcaaaccaaagaacatcatgtttcgcagtgagatcggcaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa |
30676150 |
T |
|
| Q |
123 |
gttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttgga |
222 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
30676151 |
gttttctctacagatgggtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccggctcaattattgctgaatcaaaagtgtttgga |
30676250 |
T |
|
| Q |
223 |
cgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattg |
322 |
Q |
| |
|
|||||||||||| |||||||||||| ||||||||||||||||| || | ||||||||||||| |||| ||||||||||| |||||||||||||||||| |
|
|
| T |
30676251 |
cgagaagttgatcaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccatttttggtttaggtggtattg |
30676350 |
T |
|
| Q |
323 |
gaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||| | |||||| |
|
|
| T |
30676351 |
gaaaaacaactcttgttcaattgatcttcaatgatgttagggtgagtggccattttg |
30676407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 379
Target Start/End: Original strand, 30712169 - 30712547
Alignment:
| Q |
1 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatg |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30712169 |
tcttttcgactgagaggatttacctctttcaaactaaagaacatcatgtttcgccatgagattggtaacaggttcaaagagattacaaggaggttagatg |
30712268 |
T |
|
| Q |
101 |
atattgctgaaagtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
30712269 |
atattgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctccacccc |
30712368 |
T |
|
| Q |
201 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
300 |
Q |
| |
|
| |||| |||||| | | ||| |||| ||||||||||||||||| ||||||||||||||||| || | ||||||||||||| |||| ||||||||| |
|
|
| T |
30712369 |
tcttgaatcaaaagcgctgggaagagacaatgataaagaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatccc |
30712468 |
T |
|
| Q |
301 |
atagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
30712469 |
attgttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttg |
30712547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 379
Target Start/End: Complemental strand, 30484766 - 30484388
Alignment:
| Q |
1 |
tcttgtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatg |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
30484766 |
tcttgtcgactcagaggatttacctctttcaaaccaaagaacatcatgtttcgccatgagattggtaacaggttgaaagagattacaaggaggttagatg |
30484667 |
T |
|
| Q |
101 |
atattgctgaaagtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattat |
200 |
Q |
| |
|
||||||||||||| |||||||||||||||||| |||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
30484666 |
atattgctgaaagaaagaacaagttttctctacagacgggtgaaactcttagggtaatcccagatcaagtagctgaagggcgccaaaccagctccacccc |
30484567 |
T |
|
| Q |
201 |
tgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatccc |
300 |
Q |
| |
|
| |||| |||||| || ||| |||| | ||||||||||||||||| ||||||||||||||| | || | ||||||| ||||| |||| ||||||||| |
|
|
| T |
30484566 |
tcttgaatcaaaagcattaggaagagacgatgataaagaaaagattgtcgagtttcttctcacctatgcgaaggactctaacttcatttctgtctatccc |
30484467 |
T |
|
| Q |
301 |
atagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
30484466 |
attgttggtttaggtggtattggaaaaacaactcttgttcaattgatctacaatgatgttagggtgagtcgcaattttg |
30484388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 13 - 379
Target Start/End: Complemental strand, 29854664 - 29854298
Alignment:
| Q |
13 |
agaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaa |
112 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||| || |||||||||||||| | |
|
|
| T |
29854664 |
agaggattaacctctttcaaaccaaagaacatcatgtttcgccatgagatcggcaacaggttgaaagagattacaaggaaattggatgatattgctgata |
29854565 |
T |
|
| Q |
113 |
gtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaa |
212 |
Q |
| |
|
||||||||||||||| |||| | ||| | | ||| ||||| | | || ||||||||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
29854564 |
gtaagaacaagttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgctgaaccaaa |
29854465 |
T |
|
| Q |
213 |
agtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggttta |
312 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||||||||||||||||| |||||||| |
|
|
| T |
29854464 |
agtgtttggacgagaagatgataaagaaaagattgttgagtttcttctcacccaaacgagggactcagacttcctttccgtctatcccatttttggttta |
29854365 |
T |
|
| Q |
313 |
ggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29854364 |
ggtggtgttggaaaaacaactcttcttcaattggtctacaatgatgttagggtgagtggcaattttg |
29854298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 24 - 379
Target Start/End: Complemental strand, 29873516 - 29873161
Alignment:
| Q |
24 |
ctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaag |
123 |
Q |
| |
|
|||||| |||||||| ||||||| |||||||| ||||||||| |||||||| ||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
29873516 |
ctcttttaaaccaaataacatcatgtttcgccttgagatcggcaacaggttgaaagagattacaaggagattggatgatattgctgatagtaagaacaag |
29873417 |
T |
|
| Q |
124 |
ttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggac |
223 |
Q |
| |
|
|||| |||| | ||| | | ||| ||||| | | || ||||||||||| |||| |||||| |||||||||||| |||||||||||| ||||||| |
|
|
| T |
29873416 |
ttttttctacgggagggtactattgttaaggaaagctcaaatgaagtagctgaatggcgtcaaaccagctccattattgttgaaccaaaagtatttggac |
29873317 |
T |
|
| Q |
224 |
gagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattgg |
323 |
Q |
| |
|
|||||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
29873316 |
gagaagatgataaagaaaagattgttgagtttcttctcacccaagcgagggactctgacttcctttccgtctatcccattgttggtttaggtggtattgg |
29873217 |
T |
|
| Q |
324 |
aaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
29873216 |
aaaaacaactctcgttcaattggtctacaatgatgttagggtgagtggcaattttg |
29873161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 25 - 378
Target Start/End: Complemental strand, 30207863 - 30207510
Alignment:
| Q |
25 |
tctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagt |
124 |
Q |
| |
|
|||||||||||||||||||||| ||| | | |||||| || || || || ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
30207863 |
tctttcaaaccaaagaacatcattttttgtcgtgagattggcaaaagattgaaagagattacaaggaggttagatgatattgctgaaagtaaaaacaagt |
30207764 |
T |
|
| Q |
125 |
tttctctatagacagg-tggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggac |
223 |
Q |
| |
|
|| | || || || ||||||| ||||||||| | | ||||||| ||| |||| ||||| |||| |||||||||||||||||||| ||||| | |
|
|
| T |
30207763 |
ttcatttag-gagagaatggaacttttagggaaagatcaattgaagtagcagaatggcgtcaaactagctctattattgctgaaccaaaagtatttgggc |
30207665 |
T |
|
| Q |
224 |
gagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattgg |
323 |
Q |
| |
|
|||||| ||||||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
30207664 |
gagaagatgataaagagaagattatcgagtttcttctcacccaagcgagggactccgacttcctttccgtctatcccattgttggtttaggtggtgttgg |
30207565 |
T |
|
| Q |
324 |
aaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaatttt |
378 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |
|
|
| T |
30207564 |
aaaaacaactcttgttcaattggtctacaatgatgctagggtgagtagcaatttt |
30207510 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 46 - 379
Target Start/End: Complemental strand, 30437133 - 30436800
Alignment:
| Q |
46 |
aagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctatagacaggtggaa |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||| | || |||| || |
|
|
| T |
30437133 |
aagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctccatacgggtgtaa |
30437034 |
T |
|
| Q |
146 |
ctcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagat |
245 |
Q |
| |
|
|||||||||||| || |||||||| |||||||||||||||||| |||||| | |||| |||||||||| ||| |||| | ||||||||||||||| |
|
|
| T |
30437033 |
ctcttagggaaagcccagatcaagctgctgaagggcgccaaaccagctccacccctcttgaaacaaaagtgttaggaagagacgatgataaagaaaagat |
30436934 |
T |
|
| Q |
246 |
tgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattg |
345 |
Q |
| |
|
|| |||||||||| |||| || | |||||||||||| |||| ||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30436933 |
tgtccagtttcttcttacccttgcgaaggactctgactttatttctgtctatcccgttgttggtttaggtggtattggaaaaacaactcttgttcaattg |
30436834 |
T |
|
| Q |
346 |
gtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
||||||||||||||||||||||| |||||||| |
|
|
| T |
30436833 |
atctacaatgatgttagggtgagtcgcaattttg |
30436800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 153; E-Value: 5e-81
Query Start/End: Original strand, 24 - 368
Target Start/End: Complemental strand, 30401419 - 30401072
Alignment:
| Q |
24 |
ctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaag |
123 |
Q |
| |
|
||||||||| |||||||||||| |||||||| | ||||||| |||||||| |||||||||||||| || || |||||||||||||| | ||||||||| |
|
|
| T |
30401419 |
ctctttcaacccaaagaacatcgtgtttcgccgtcagatcggcaacaggttgaaagagattacaagaagattggatgatattgctgatattaagaacaaa |
30401320 |
T |
|
| Q |
124 |
ttttctctat-agacagg--tggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttg |
220 |
Q |
| |
|
||| |||| ||| | || | | ||||||||| | |||| |||||| |||| |||| |||| | ||||||||||||| ||||| ||||||||| |
|
|
| T |
30401319 |
tttcttctacgagatggtactgtatatgttagggaaagctcagatgaagtagatgaatggcgtcaaatcaactccattattgctaaaccagaagtgtttg |
30401220 |
T |
|
| Q |
221 |
gacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtat |
320 |
Q |
| |
|
||||| ||| |||||||||||||||| |||||||||||||||||| || |||||||||||||||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
30401219 |
gacgaaaagatgataaagaaaagatttttgagtttcttctcacccatgcgagggactctgacttcctttccgtctaccccattgttggtttaggtggtat |
30401120 |
T |
|
| Q |
321 |
tggaaaaacaactcttgttcaattggtctacaatgatgttagggtgag |
368 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30401119 |
tggtaaaacaactcttgttcaattggtctacaatgatgttagggtgag |
30401072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #12
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 44 - 378
Target Start/End: Original strand, 30241162 - 30241499
Alignment:
| Q |
44 |
tcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctatagacaggt-- |
141 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||| || | ||| ||||||| ||| || |||| |
|
|
| T |
30241162 |
tcaagtttcgccatgagatcggtaacaggttggaagagattaacgggaggttggatgatattgctgataggaggaagaagttttttctgcaggaaggtac |
30241261 |
T |
|
| Q |
142 |
-ggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaa |
240 |
Q |
| |
|
|||||| || |||||| || | || | ||||||||| |||| |||||| || | |||||| ||||||||||||||||||||||||||| |||||| | |
|
|
| T |
30241262 |
tggaactgttcgggaaagcccaaatgacgtagctgaatggcgtcaaaccagcgctattattactgaaccaaaagtgtttggacgagaagacgataaaaag |
30241361 |
T |
|
| Q |
241 |
aagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttc |
340 |
Q |
| |
|
|||||| ||||||||||||||||||||| |||||| |||||||||||| |||||||| | |||| ||||||||| |||||||||| |||||| ||| |
|
|
| T |
30241362 |
aagattatccagtttcttctcacccaagcaaaggactccgacttcctttccatctatcccgtttttgggttaggtggtcttggaaaaaccactcttcttc |
30241461 |
T |
|
| Q |
341 |
aattggtctacaatgatgttagggtgagtgtcaatttt |
378 |
Q |
| |
|
||| ||||||||||||||||| |||||| ||||||| |
|
|
| T |
30241462 |
aatcggtctacaatgatgttaccgtgagtagcaatttt |
30241499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #13
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 174 - 378
Target Start/End: Original strand, 17417507 - 17417711
Alignment:
| Q |
174 |
tgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagg |
273 |
Q |
| |
|
|||| ||||||||||| ||||| |||||||||||||||| ||||||||||| |||| ||||| | | ||||||| ||||||||| ||||||||||||||| |
|
|
| T |
17417507 |
tgaatggcgccaaaccagctcctttattgctgaaccaaaggtgtttggacgggaagatgatacaaagaagattgttgagtttctgctcacccaagcaagg |
17417606 |
T |
|
| Q |
274 |
gactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtca |
373 |
Q |
| |
|
|| | ||| ||||||| ||||||||||||||||| |||||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||| || |
|
|
| T |
17417607 |
gattgtgaaatcctttcagtctatcccatagttgggttaggtggtattggtaaaacaactctagctcaattggtctacaatgatgttagggtgagtagca |
17417706 |
T |
|
| Q |
374 |
atttt |
378 |
Q |
| |
|
||||| |
|
|
| T |
17417707 |
atttt |
17417711 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #14
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 379
Target Start/End: Original strand, 30520537 - 30520744
Alignment:
| Q |
172 |
gctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaa |
271 |
Q |
| |
|
|||||| |||| ||||| |||| |||||||||||||||||||| | ||| ||||||| ||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
30520537 |
gctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaa |
30520636 |
T |
|
| Q |
272 |
gggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgt |
371 |
Q |
| |
|
|| ||||||| |||||||| ||||||| || ||||| |||||||||||||| ||||||||||||| |||||| || || |||||| ||||||||| |
|
|
| T |
30520637 |
agggctctgacctcctttccatctatccaattgttggcttaggtggtattgggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtga |
30520736 |
T |
|
| Q |
372 |
caattttg |
379 |
Q |
| |
|
|||||||| |
|
|
| T |
30520737 |
caattttg |
30520744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #15
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 172 - 379
Target Start/End: Original strand, 30560877 - 30561084
Alignment:
| Q |
172 |
gctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaa |
271 |
Q |
| |
|
|||||| |||| ||||| |||| |||||||||||||||||||| | ||| ||||||| ||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
30560877 |
gctgaatggcgtcaaactagctctattattgctgaaccaaaagtatatggtcgagaagatgataaagagaagattgtcgagtttcttctcacccaagcaa |
30560976 |
T |
|
| Q |
272 |
gggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgt |
371 |
Q |
| |
|
|| ||||||| |||||||| ||||||| || ||||| |||||||||||||| ||||||||||||| |||||| || || |||||| ||||||||| |
|
|
| T |
30560977 |
agggctctgacctcctttccatctatccaattgttggcttaggtggtattgggaaaacaactcttgctcaattagtttataatgatcaccgggtgagtga |
30561076 |
T |
|
| Q |
372 |
caattttg |
379 |
Q |
| |
|
|||||||| |
|
|
| T |
30561077 |
caattttg |
30561084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #16
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 167 - 358
Target Start/End: Complemental strand, 17984083 - 17983906
Alignment:
| Q |
167 |
aagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcaccca |
266 |
Q |
| |
|
|||| |||||| ||||||||||| || || ||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
17984083 |
aagtggctgaatggcgccaaaccagccccgttattgctgaatcaaaagtgtttggacgagaag--------------attgttgagtttcttctcaccca |
17983998 |
T |
|
| Q |
267 |
agcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatg |
358 |
Q |
| |
|
||| ||| ||||||||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||| ||||||||||||||| |||| |
|
|
| T |
17983997 |
agcgaggttctctgacttcctttccgtctatcccattgttgggttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatg |
17983906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #17
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 251 - 370
Target Start/End: Original strand, 30330200 - 30330319
Alignment:
| Q |
251 |
agtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtcta |
350 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||| |||||||||||||||||||||| |||||||||||||||||| |||||| |||| || | |
|
|
| T |
30330200 |
agtttcttctcacccaagcgagggacactgacttcctttccatctatcccatagttggtttaggaggtattggaaaaacaactattgttcgattgatcca |
30330299 |
T |
|
| Q |
351 |
caatgatgttagggtgagtg |
370 |
Q |
| |
|
| ||||| |||||||||||| |
|
|
| T |
30330300 |
cgatgatattagggtgagtg |
30330319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #18
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 167 - 378
Target Start/End: Complemental strand, 30476574 - 30476363
Alignment:
| Q |
167 |
aagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcaccca |
266 |
Q |
| |
|
|||| |||||| |||||||||| ||||||||||||||||||| |||||||||||||||| || ||||| ||| | ||||| ||||||||||||||||| |
|
|
| T |
30476574 |
aagttgctgaatggcgccaaacaagctccattattgctgaacccaaagtgtttggacgagtagatgatagagagaggattgtcgagtttcttctcaccca |
30476475 |
T |
|
| Q |
267 |
agcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtg |
366 |
Q |
| |
|
||| | ||||||||||| ||| ||||||| || ||||| |||||||| |||| |||||||| |||| |||| |||||||||||||| |||||| |
|
|
| T |
30476474 |
agcgcaagtatctgacttcctatccatctatcctattgttggcctaggtggtgttggtaaaacaacacttgctcaaatggtctacaatgatcatagggta |
30476375 |
T |
|
| Q |
367 |
agtgtcaatttt |
378 |
Q |
| |
|
||| ||||||| |
|
|
| T |
30476374 |
agtagcaatttt |
30476363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 101
Target Start/End: Original strand, 17417435 - 17417509
Alignment:
| Q |
27 |
tttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatga |
101 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||||| | ||||| |||||||||||||||| || ||||| |
|
|
| T |
17417435 |
tttcaaaccaaagaacatcatatttcgccgtgagatcggccaaaggttggaagagattacaaggagatttgatga |
17417509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 23 - 122
Target Start/End: Original strand, 30329604 - 30329700
Alignment:
| Q |
23 |
cctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa |
122 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| || ||||| ||||| ||||| || || |||||| | |||||||||| ||||||||| |
|
|
| T |
30329604 |
cctctttcaaaccaaagaacattgtatttcgccatgagatc---aataggttgaaagaaattaccagaagattagataagattgctgaaaataagaacaa |
30329700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 27 - 126
Target Start/End: Complemental strand, 30476714 - 30476615
Alignment:
| Q |
27 |
tttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
126 |
Q |
| |
|
|||||| | ||||||||| |||||||| ||| ||||| || ||||| ||||| ||||||||||| || ||| | |||||||||||||| |||||||| |
|
|
| T |
30476714 |
tttcaacctaaagaacattgtgtttcgccgtgacatcggcaaaaggttgaaagaaattacaaggagattcgatcaaattgctgaaagtaaagacaagttt |
30476615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 30520401 - 30520491
Alignment:
| Q |
36 |
aaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
126 |
Q |
| |
|
|||||| |||| |||||||||| | || || | ||||| ||||| ||||||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
30520401 |
aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt |
30520491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 36 - 126
Target Start/End: Original strand, 30560741 - 30560831
Alignment:
| Q |
36 |
aaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttt |
126 |
Q |
| |
|
|||||| |||| |||||||||| | || || | ||||| ||||| ||||||| || || |||||||||||||||||||| ||||||||| |
|
|
| T |
30560741 |
aaagaatatcatgtttcgccataaaattggcactaggtttaaagaaattacaaacagattcgatgatattgctgaaagtaaaaacaagttt |
30560831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 5 - 379
Target Start/End: Original strand, 20295327 - 20295701
Alignment:
| Q |
5 |
gtcgactgagaggatttacctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatat |
104 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20295327 |
gtcgactgagaggatttaactctttcaaaccaatgaacatcgcgtttcgccatgagatcggtagcaggtttaaagagattacaaggaggttagatgatat |
20295426 |
T |
|
| Q |
105 |
tgctgaaagtaagaacaagttttctctatagacaggtggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgct |
204 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| | | |
|
|
| T |
20295427 |
tgctgaaagtaagaacaagttttctctacagatgggtggaactcttagggaaatcccagatcaagtagctgaagggcgccaaaccagctccacccctctt |
20295526 |
T |
|
| Q |
205 |
gaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatag |
304 |
Q |
| |
|
||| |||||| || ||| |||| | ||||||| ||||||||| ||||||||||||||||| || | ||||||||||||| |||| ||||||||||| | |
|
|
| T |
20295527 |
gaatcaaaagcattgggaagagacgatgataaaaaaaagattgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattg |
20295626 |
T |
|
| Q |
305 |
ttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| |||||||| |
|
|
| T |
20295627 |
ttggtttaggtggtattggaaaaacaactcttgttcaattagtctacaatgatgatcgcgtgagtggcaattttg |
20295701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 170 - 369
Target Start/End: Complemental strand, 52353155 - 52352956
Alignment:
| Q |
170 |
tagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagc |
269 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||||| ||| | |||||||| ||| |||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
52353155 |
tagctgaatggcgccaaaccagctccatttttactgaaccgaaaatctttggacggaaagaagataaagagaagattgccgagtttcttctcacccaagc |
52353056 |
T |
|
| Q |
270 |
aagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagt |
369 |
Q |
| |
|
|| | | |||||||||| || ||||| || ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
52353055 |
gagtaagtttgacttccttgttgtgtatcctattgttggtttaggtggtgttggtaaaacaactcttgttcaattggtctacaatgatgttagagtgagt |
52352956 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 192 - 328
Target Start/End: Complemental strand, 13617773 - 13617637
Alignment:
| Q |
192 |
ctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttcc |
291 |
Q |
| |
|
||||| |||||||||| |||| |||||||||||| ||| | ||||||| ||||||| | ||||| ||||||||||| |||| ||||||||| ||||| |
|
|
| T |
13617773 |
ctccactattgctgaatcaaaggtgtttggacgataagataataaagagaagattgttaggtttcatctcacccaagtgagggcctctgactttctttct |
13617674 |
T |
|
| Q |
292 |
gtctatcccatagttggtttaggtggtattggaaaaa |
328 |
Q |
| |
|
| ||||||||| ||||||||||||||| ||| ||||| |
|
|
| T |
13617673 |
gactatcccattgttggtttaggtggtgttgcaaaaa |
13617637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 182; Significance: 3e-98; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 46 - 379
Target Start/End: Complemental strand, 26708652 - 26708319
Alignment:
| Q |
46 |
aagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaagttttctctatagacaggtggaa |
145 |
Q |
| |
|
|||||||||||| |||||||||||||||| |||||||||||| ||||||| ||| |||||||||| |||||||||||||||||||| |||| ||||||| |
|
|
| T |
26708652 |
aagtttcgccataagatcggtaacaggttgaaagagattacagggaggttggatcgtattgctgaacgtaagaacaagttttctctacagacgggtggaa |
26708553 |
T |
|
| Q |
146 |
ctcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagat |
245 |
Q |
| |
|
|||||||||||| || | |||||||||||||||||||||||||| |||||| | |||| |||||| ||| ||| |||| | ||||||||||||||| |
|
|
| T |
26708552 |
ctcttagggaaagcccatatcaagtagctgaagggcgccaaaccagctccacccctcttgaaacaaaagcgttgggaagagacgatgataaagaaaagat |
26708453 |
T |
|
| Q |
246 |
tgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattg |
345 |
Q |
| |
|
|| ||||||||||||||||| || | ||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||||||||||||| ||| |
|
|
| T |
26708452 |
tgtcgagtttcttctcacccatgcgaaggactctgacttcatttctgtctatcccattgttggcttaggtggtattggaaaaacaactcttgttcagttg |
26708353 |
T |
|
| Q |
346 |
gtctacaatgatgttagggtgagtgtcaattttg |
379 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| |
|
|
| T |
26708352 |
atctacaacgatgttagggtgagtgacaattttg |
26708319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 23 - 369
Target Start/End: Original strand, 25292710 - 25293056
Alignment:
| Q |
23 |
cctctttcaaaccaaagaacatcaagtttcgccatgagatcggtaacaggttaaaagagattacaaggaggttagatgatattgctgaaagtaagaacaa |
122 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||| | || || |||| ||| ||||||||||||||||| || ||||||||||||| || ||||||||| |
|
|
| T |
25292710 |
cctctttcaaaccaaagaacatcatgtttcaccattacattggcaacaagttgaaagagattacaaggagattggatgatattgctgcaactaagaacaa |
25292809 |
T |
|
| Q |
123 |
gttttctctatagacagg-tggaactcttagggaaatccgagatcaagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttgg |
221 |
Q |
| |
|
|||| ||| | |||||| ||||||| ||||||||| | | | ||||||||||| ||||||||| | || |||||||| ||||||||||| ||||| |
|
|
| T |
25292810 |
gtttcttct-tcgacagggtggaactgttagggaaagctcaactgaagtagctgaatagcgccaaactagttctattattgccgaaccaaaagtatttgg |
25292908 |
T |
|
| Q |
222 |
acgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtatt |
321 |
Q |
| |
|
|||||||| ||||||||| |||| || ||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| || |
|
|
| T |
25292909 |
acgagaagatgataaagagaagactgtcgagtttcttcttacccaagcaagggactctgacttcctttccgtccatcccattgttggtttaggtggtgtt |
25293008 |
T |
|
| Q |
322 |
ggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagt |
369 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25293009 |
ggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagt |
25293056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 292 - 353
Target Start/End: Original strand, 38939073 - 38939134
Alignment:
| Q |
292 |
gtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaa |
353 |
Q |
| |
|
|||||| |||| |||||| ||||||| |||||||||||| |||| ||||||||||||||| |
|
|
| T |
38939073 |
gtctattccattgttggtctaggtggatatggaaaaacaacacttgctcaattggtctacaa |
38939134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 135; Significance: 3e-70; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 167 - 377
Target Start/End: Complemental strand, 7100620 - 7100410
Alignment:
| Q |
167 |
aagtagctgaagggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcaccca |
266 |
Q |
| |
|
|||| |||||| ||||||||||| ||||| |||||||||||||||| ||||||||||||||| ||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
7100620 |
aagtggctgaatggcgccaaaccagctcctttattgctgaaccaaagatgtttggacgagaagatgataaagagaagattgttgagtttcttctcaccca |
7100521 |
T |
|
| Q |
267 |
agcaagggactctgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtg |
366 |
Q |
| |
|
||||| ||||||||||||||| |||||||||||||| || |||||||||||| ||||||||||||||||| ||||||||| |||||||||| ||||||| |
|
|
| T |
7100520 |
agcaaaggactctgacttcctatccgtctatcccattgtcggtttaggtggtgttggaaaaacaactctttctcaattggtttacaatgatgatagggtg |
7100421 |
T |
|
| Q |
367 |
agtgtcaattt |
377 |
Q |
| |
|
|||| |||||| |
|
|
| T |
7100420 |
agtgacaattt |
7100410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 179 - 369
Target Start/End: Original strand, 7580638 - 7580828
Alignment:
| Q |
179 |
ggcgccaaaccggctccattattgctgaaccaaaagtgtttggacgagaagttgataaagaaaagattgctgagtttcttctcacccaagcaagggactc |
278 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||| |||||||||||||||| ||||||||| | ||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
7580638 |
ggcgccaaaccagctccattattgccgaaccaaaggtgtttggacgagaagatgataaagagaggattgttgagtttcttctcacccaagcgagggactc |
7580737 |
T |
|
| Q |
279 |
tgacttcctttccgtctatcccatagttggtttaggtggtattggaaaaacaactcttgttcaattggtctacaatgatgttagggtgagt |
369 |
Q |
| |
|
|||||||||||||||||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |||||||||| |
|
|
| T |
7580738 |
ggacttcctttccgtctatccaattgttggtttaggtggtgttggaaaaacaactcttgctcaattggtctacaacgatgatagggtgagt |
7580828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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