View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11725_low_5 (Length: 354)
Name: NF11725_low_5
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 337
Target Start/End: Complemental strand, 32515286 - 32514950
Alignment:
| Q |
1 |
ctctacgttgtttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaaag |
100 |
Q |
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| T |
32515286 |
ctctacgttgtttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaaag |
32515187 |
T |
|
| Q |
101 |
tgttgcagccatattcaagggtaagaatcacaaaattatttattggtttctgttctgcgttatactcatgaaactaatgtttttcaacttacaaatttaa |
200 |
Q |
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| T |
32515186 |
tgttgcagccatattcaagggtaagaatcacaaaattatttattggtttctattctttgttatactcatgaaactaatgtttttcaacttacaaatttaa |
32515087 |
T |
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| Q |
201 |
caaacatcaacttgaatactatgagaaaagtttttctgcattagaatttgttttgaaactttcatgcatatatttcttcaatagataagatgctgcttgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
32515086 |
caaacatcaacttgaatactatgagaaaagtttttctgcattagaatttgttttgaaactttcatgcacatatttcttcaatagataagatgctgcttgt |
32514987 |
T |
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| Q |
301 |
gtttattttcaatccttgtgaaatacatccttccttc |
337 |
Q |
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| T |
32514986 |
gtttattttcaatccttgtgaaatacatccttccttc |
32514950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 10 - 133
Target Start/End: Original strand, 32542466 - 32542589
Alignment:
| Q |
10 |
gtttatctcattaacatgacaacaaatattcgtatttggaatgctttgaactcagatatggaagaatccaacatgaatataattaaaaaagtgttgcagc |
109 |
Q |
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|||| ||||||||||||||| || ||| ||||||||||||| || ||||||||||| ||||| | ||| |||||||||||||| ||||||||||||||| |
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| T |
32542466 |
gtttgtctcattaacatgactactaatgttcgtatttggaaagccttgaactcagagatggagggatcggacatgaatataattcaaaaagtgttgcagc |
32542565 |
T |
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| Q |
110 |
catattcaagggtaagaatcacaa |
133 |
Q |
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| T |
32542566 |
cttattcaagggtaagaatcacaa |
32542589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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