View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11725_low_7 (Length: 278)
Name: NF11725_low_7
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 80 - 209
Target Start/End: Complemental strand, 18106508 - 18106379
Alignment:
| Q |
80 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
179 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18106508 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
18106409 |
T |
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| Q |
180 |
aatggcttaaaactaattattaatagggtt |
209 |
Q |
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| T |
18106408 |
aatggcttaaaactaattattaatagggtt |
18106379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 18097390 - 18097267
Alignment:
| Q |
80 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
179 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| | |||| |||||||||||| | |
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| T |
18097390 |
aatcgtcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcattgatcaagtggcacagtctaagcacaacatgcctg |
18097291 |
T |
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| Q |
180 |
aatggcttaaaactaattattaat |
203 |
Q |
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|||||||||||||||||||||||| |
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| T |
18097290 |
aatggcttaaaactaattattaat |
18097267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 80 - 203
Target Start/End: Original strand, 18138863 - 18138986
Alignment:
| Q |
80 |
aatcatcattctgaagcaacaaaacaattctataactgacttctaacaaccaaattcacatgcactgatcatgtggcatactctaggcacaacatgcccg |
179 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| || |||||| |||||| |||||| |||||||||||| | |
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| T |
18138863 |
aatcgtcattctgaagcaacaaaacaattttataactgacttctaacaaccaaactcacattcattgatcaagtggcacactctaagcacaacatgcctg |
18138962 |
T |
|
| Q |
180 |
aatggcttaaaactaattattaat |
203 |
Q |
| |
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||||||||||||||||||| |||| |
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| T |
18138963 |
aatggcttaaaactaattactaat |
18138986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 18106584 - 18106531
Alignment:
| Q |
31 |
acaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca |
84 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18106584 |
acaaaagatagaactaactaagcatgaagcaacaaaacaataccataccaatca |
18106531 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Complemental strand, 37876119 - 37876069
Alignment:
| Q |
30 |
aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc |
79 |
Q |
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|
||||||||||||||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
37876119 |
aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc |
37876069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Complemental strand, 37875985 - 37875943
Alignment:
| Q |
158 |
tactctaggcacaacatgcccgaatggcttaaaactaattatt |
200 |
Q |
| |
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||||||| || ||||||||| |||||||||||||||||||||| |
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|
| T |
37875985 |
tactctaagcgcaacatgcctgaatggcttaaaactaattatt |
37875943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 23895562 - 23895612
Alignment:
| Q |
30 |
aacaaaagatagaactaactaagcatgaagc-aacaaaacaataccatacc |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||| |||||||||||| |
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|
| T |
23895562 |
aacaaaagatagaactaactaagcatgaagcaaataaaccaataccatacc |
23895612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 23895696 - 23895738
Alignment:
| Q |
158 |
tactctaggcacaacatgcccgaatggcttaaaactaattatt |
200 |
Q |
| |
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||||||| || ||||||||| |||||||||||||||||||||| |
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| T |
23895696 |
tactctaagcgcaacatgcctgaatggcttaaaactaattatt |
23895738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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