View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11725_low_8 (Length: 243)

Name: NF11725_low_8
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11725_low_8
NF11725_low_8
[»] chr5 (16 HSPs)
chr5 (26-243)||(30711814-30712026)
chr5 (26-243)||(30336911-30337123)
chr5 (26-243)||(30484909-30485121)
chr5 (18-243)||(30061880-30062105)
chr5 (18-243)||(30751154-30751380)
chr5 (60-243)||(30675708-30675886)
chr5 (26-243)||(29873682-29873890)
chr5 (141-243)||(29854819-29854921)
chr5 (155-243)||(30437306-30437394)
chr5 (158-240)||(30240906-30240988)
chr5 (141-240)||(30208033-30208132)
chr5 (141-231)||(30401597-30401687)
chr5 (149-243)||(30520129-30520223)
chr5 (149-243)||(30560469-30560563)
chr5 (152-238)||(30476888-30476974)
chr5 (155-243)||(17417178-17417266)
[»] chr4 (1 HSPs)
chr4 (28-243)||(20294970-20295180)
[»] chr7 (1 HSPs)
chr7 (155-243)||(26708825-26708913)
[»] chr3 (1 HSPs)
chr3 (141-243)||(25292443-25292545)
[»] chr1 (1 HSPs)
chr1 (141-243)||(7580224-7580326)


Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 30711814 - 30712026
Alignment:
Q  26 cattgcatttattttcaaaggtctccagcttggctcagcactcattctatctaaacaaatttctcatcttcttatcttttcaactctttaatttgttttc 125  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  30711814 cattgcatttattttcaaaggtctccagcttggttcagcactcattctatctaaactaatttctcatcttcttatcttttcaactctttaatttgttttc 30711913  T
Q  126 nnnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtc 225  Q
                   |||| ||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  30711914 -----acaaaaacaatggctgacgctttgcttggatttgtttttgaaaacttgacgtctctccttcaaaatgaattttctaccatttctggaatcaaatc 30712008  T
Q  226 aaaggctcaaaagctatc 243  Q
    ||||| ||||||||||||    
T  30712009 aaaggttcaaaagctatc 30712026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 26 - 243
Target Start/End: Original strand, 30336911 - 30337123
Alignment:
Q  26 cattgcatttattttcaaaggtc-tccagcttggctcagcactcattctatctaaacaaatttctcatcttcttatcttttcaactctttaatttgtttt 124  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30336911 cattgcatttattttcaaaggtcctccagcttggttcaacactcattctatctaaacaaatttctcgtcttcttatcttttcaactctttaatttgtttt 30337010  T
Q  125 cnnnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagt 224  Q
    |               ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||||||||||||| ||||    
T  30337011 cacaaaaaaa------tggccgacgctttgcttggagttgtgtttgaaaatttgacggctctccatcaaaatgaattttcaaccatttctggaattaagt 30337104  T
Q  225 caaaggctcaaaagctatc 243  Q
    |||||||||||||||||||    
T  30337105 caaaggctcaaaagctatc 30337123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 30485121 - 30484909
Alignment:
Q  26 cattgcatttattttcaaaggtc-tccagcttggctcagcactcattctatctaaacaaatttctcatcttcttatcttttcaactctttaatttgtttt 124  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  30485121 cattgcatttattttcaaaggtcctccagcttggttcaacactcattctatctaaacaaatttctcgtcttcttatcttttcaactctttaatttgtttt 30485022  T
Q  125 cnnnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagt 224  Q
    |               ||||   ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  30485021 cacaaaaaaa------tggcttgcgctttgcttggagttgtgttcgaaaatttgacatctctccttcaaaatgaattttcaaccatttctggaatcaagt 30484928  T
Q  225 caaaggctcaaaagctatc 243  Q
    |||||||||||||||||||    
T  30484927 caaaggctcaaaagctatc 30484909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 30062105 - 30061880
Alignment:
Q  18 cctacaaccattgcatttattttcaaaggtctccagcttggctcagcactcattctatctaaacaaatttctcatcttcttatcttttca------actc 111  Q
    ||||| ||||||||||||||| ||||||||||||||||||| |||| ||||| ||| ||||||||||||||||||| ||||||| |||||      ||||    
T  30062105 cctactaccattgcatttattctcaaaggtctccagcttggttcagtactcactctttctaaacaaatttctcatcatcttatcatttcactttcaactc 30062006  T
Q  112 tttaatttgttttcnnnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatt 211  Q
    ||||||||||||||               ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||    
T  30062005 tttaatttgttttcacaaaaaaa------tggccgacgctttgcttggagttgtgtttgaaaatttgacggctctccttcaaaatgaattttcaaccatt 30061912  T
Q  212 tctggaatcaagtcaaaggctcaaaagctatc 243  Q
    |||||||| |||||||||| ||||||||||||    
T  30061911 tctggaattaagtcaaaggttcaaaagctatc 30061880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 30751380 - 30751154
Alignment:
Q  18 cctacaaccattgcatttattttcaaaggtctccagcttggctcagcactcattctatctaaacaaatttctcatcttcttatcttttca------actc 111  Q
    ||||| |||||||| |||||| ||||||||||||||||||| |||||||||| ||| ||||||| ||||||||||| ||||||| |||||      ||||    
T  30751380 cctactaccattgcttttattctcaaaggtctccagcttggttcagcactcactctttctaaactaatttctcatcatcttatcatttcactttcaactc 30751281  T
Q  112 tttaatttgttttcnnnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatt 211  Q
    ||||||||||||||               |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  30751280 tttaatttgttttcacaaaaacaa-----tggctgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatt 30751186  T
Q  212 tctggaatcaagtcaaaggctcaaaagctatc 243  Q
    |||||||| |||||||||||||||||||||||    
T  30751185 tctggaattaagtcaaaggctcaaaagctatc 30751154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 60 - 243
Target Start/End: Original strand, 30675708 - 30675886
Alignment:
Q  60 tcagcactcattctatctaaacaaatttctcatcttcttatcttttcaactctttaatttgttttcnnnnnnnnnnnnnnntggccgacgctttgcttgg 159  Q
    |||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||  ||| |||||               |||| ||||||||||||||    
T  30675708 tcagcattcattatatctaaacaaatttctaatcttcttatcttttcaactctttc-tttcttttcacaaaaaaaaa----tggctgacgctttgcttgg 30675802  T
Q  160 agttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagctatc 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||    
T  30675803 agttgtgtttgaaaatttgacgtctctccttcaaaatgaattttcaaccatttctggaatcaagtcaaaggttcaaaagctatc 30675886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 26 - 243
Target Start/End: Complemental strand, 29873890 - 29873682
Alignment:
Q  26 cattgcatttattttcaaaggtctccagcttggctcagcactcattctatctaaacaaatttctcatctt--cttatcttttcaactctttaatttgttt 123  Q
    ||||||||||||| |||||||||||| |||| | | ||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||    |||||    
T  29873890 cattgcatttattctcaaaggtctcctgcttagttaagcactcattccatcgaaacaaatttctcatcttttcttatcttttcaactcttt----tgttt 29873795  T
Q  124 tcnnnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaag 223  Q
    ||               ||||  |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  29873794 tcacaaaaaa-------tggctaacgctttgctcggagttgtgtttgaaaatttgatgtctctccttcaaaatgaattttctaccatttctggtatcaag 29873702  T
Q  224 tcaaaggctcaaaagctatc 243  Q
    ||||||||| |||| |||||    
T  29873701 tcaaaggctgaaaaactatc 29873682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 29854921 - 29854819
Alignment:
Q  141 tggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagct 240  Q
    ||||||||||||| || |||||||||||| | ||||||||||||||||| |||| ||||||||| ||||||||| ||||||||||||||||| |||| ||    
T  29854921 tggccgacgctttactcggagttgtgtttcagaatttgacgtctctcctacaaagtgaattttcaaccatttctagaatcaagtcaaaggctgaaaaact 29854822  T
Q  241 atc 243  Q
    |||    
T  29854821 atc 29854819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 30437394 - 30437306
Alignment:
Q  155 cttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagctatc 243  Q
    ||||||||||||||||| |||||||  ||||| |||||||||||||||||||| |||||||||||||||||||||||| |||| |||||    
T  30437394 cttggagttgtgtttgagaatttgatatctctgcttcaaaatgaattttctactatttctggaatcaagtcaaaggctgaaaacctatc 30437306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 158 - 240
Target Start/End: Original strand, 30240906 - 30240988
Alignment:
Q  158 ggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagct 240  Q
    |||||||||||||| || |||| ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||    
T  30240906 ggagttgtgtttgataacttgaagtctctcctacaaaatgaatttgcaaccatttctggaatcaagtcaaaggctcaaaagct 30240988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 141 - 240
Target Start/End: Complemental strand, 30208132 - 30208033
Alignment:
Q  141 tggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagct 240  Q
    |||| ||||| || ||||||||||||||  | ||||||| ||||||  |||||||||||||  | |||||||||||||||||||| |||||||| |||||    
T  30208132 tggctgacgccttacttggagttgtgttacagaatttgaagtctcttgttcaaaatgaattggccaccatttctggaatcaagtccaaggctcagaagct 30208033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 231
Target Start/End: Complemental strand, 30401687 - 30401597
Alignment:
Q  141 tggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggc 231  Q
    ||||||| ||||| ||| ||| || |||||| ||  |||  |||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  30401687 tggccgaagctttacttagagctgcgtttgagaaagtgaattctctcctacaaagtgaattttctaccatttctggaatcaagtcaaaggc 30401597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 30520129 - 30520223
Alignment:
Q  149 gctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagctatc 243  Q
    ||||| ||||| ||||||||||||||| |    |||||  |||||||||||||| | |||||||||||||||||||| ||||||| |||||||||    
T  30520129 gctttacttggtgttgtgtttgaaaatctactatctcttgttcaaaatgaatttgcaaccatttctggaatcaagtccaaggctctaaagctatc 30520223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 149 - 243
Target Start/End: Original strand, 30560469 - 30560563
Alignment:
Q  149 gctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagctatc 243  Q
    ||||| ||||| ||||||||||||||| |    |||||  |||||||||||||| | |||||||||||||||||||| ||||||| |||||||||    
T  30560469 gctttacttggtgttgtgtttgaaaatctactatctcttgttcaaaatgaatttgcaaccatttctggaatcaagtccaaggctctaaagctatc 30560563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 152 - 238
Target Start/End: Complemental strand, 30476974 - 30476888
Alignment:
Q  152 ttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaag 238  Q
    ||||| |||||||| ||||| ||||||   |||||  |||||||||||||| | ||||||||||||||||  ||||||||| |||||    
T  30476974 ttgctaggagttgtatttgagaatttgttatctcttgttcaaaatgaatttgcaaccatttctggaatcacatcaaaggctgaaaag 30476888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 155 - 243
Target Start/End: Original strand, 17417178 - 17417266
Alignment:
Q  155 cttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagctatc 243  Q
    ||||||||||||||||| ||||||   |||||  ||||||||||| || | |||| || |||||| ||||||||||   ||||||||||    
T  17417178 cttggagttgtgtttgagaatttgttatctctggttcaaaatgaaattgcaaccacttttggaattaagtcaaaggtcgaaaagctatc 17417266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 28 - 243
Target Start/End: Original strand, 20294970 - 20295180
Alignment:
Q  28 ttgcattt-attttcaaaggtctccagcttggctcagcactcattctatctaaacaaatttctcatcttcttatcttttcaactctttaatttgttttcn 126  Q
    |||||||| ||| |||||||||||| |||| | ||| |||||||||||||   ||||||||||||||||||||||||| ||||||||||||||||||||     
T  20294970 ttgcatttcattctcaaaggtctcctgcttagttcaacactcattctatccggacaaatttctcatcttcttatctttgcaactctttaatttgttttca 20295069  T
Q  127 nnnnnnnnnnnnnntggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtca 226  Q
                  ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||    
T  20295070 caaaaaaa------tggccgacgctttgcttggagttgtgtctgaaaatttgacgtctctccttcaaaatgaatttgcaaccatttctggaatcaggtca 20295163  T
Q  227 aaggctcaaaagctatc 243  Q
    ||||||| |||||||||    
T  20295164 aaggctcgaaagctatc 20295180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 26708913 - 26708825
Alignment:
Q  155 cttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagctatc 243  Q
    |||||||||||||| || ||||||| |||||| ||||||| ||||||||||||||||| ||||||||||||||||||| |||| |||||    
T  26708913 cttggagttgtgttcgagaatttgatgtctctgcttcaaattgaattttctaccatttatggaatcaagtcaaaggctgaaaacctatc 26708825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 25292443 - 25292545
Alignment:
Q  141 tggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagct 240  Q
    |||| ||||| || ||||||||||| ||||| ||| ||  ||| || ||||||||||||||| | ||||||||| ||||||||||||| ||| |||||||    
T  25292443 tggcggacgcattacttggagttgtatttgagaatatgttgtccctgcttcaaaatgaatttgcaaccatttctagaatcaagtcaaaagctgaaaagct 25292542  T
Q  241 atc 243  Q
    |||    
T  25292543 atc 25292545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 7580224 - 7580326
Alignment:
Q  141 tggccgacgctttgcttggagttgtgtttgaaaatttgacgtctctccttcaaaatgaattttctaccatttctggaatcaagtcaaaggctcaaaagct 240  Q
    ||||||| ||||| ||||| ||||||||| | ||  ||| ||||||  ||||||| |||||||| ||  | | |||||||||||||||||||||||||||    
T  7580224 tggccgaggctttacttggtgttgtgtttcacaacctgatgtctctggttcaaaacgaattttcaactctatttggaatcaagtcaaaggctcaaaagct 7580323  T
Q  241 atc 243  Q
    |||    
T  7580324 atc 7580326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University