View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11725_low_9 (Length: 218)
Name: NF11725_low_9
Description: NF11725
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11725_low_9 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 30742198 - 30742372
Alignment:
| Q |
15 |
caaaggcatgttgggacaaagcaagcatgtttttggctaatgaataagaatcaatctatcannnnnnncataaatcataattgacatatgttccatagat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
30742198 |
caaaggcatgttgggacaaagcaagcatgtttttggctaatgaataagaatcaatct-----------cataaatcataattgacatatgttccatagat |
30742286 |
T |
|
| Q |
115 |
taagactgatgcatgcatggacttggtgtgtctgcaacttgtttaaaagtgatgagatattcagtccacattttaagagtagaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30742287 |
taagactgatgcatgcatggacttggtgtgtctgcaacttgtttaaaagtgatgagatattcagtccacattttaagagtagaaag |
30742372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 44186145 - 44186106
Alignment:
| Q |
146 |
ctgcaacttgtttaaaagtgatgagatattcagtccacat |
185 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||| |
|
|
| T |
44186145 |
ctgcaacttgtttagatgtgatgagatattcagtccacat |
44186106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 84 - 124
Target Start/End: Original strand, 28992492 - 28992532
Alignment:
| Q |
84 |
ataaatcataattgacatatgttccatagattaagactgat |
124 |
Q |
| |
|
||||||||||||| ||| |||||| |||||||||||||||| |
|
|
| T |
28992492 |
ataaatcataattaacacatgttctatagattaagactgat |
28992532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University