View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11726_high_4 (Length: 401)
Name: NF11726_high_4
Description: NF11726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11726_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 4 - 383
Target Start/End: Complemental strand, 39293965 - 39293582
Alignment:
| Q |
4 |
gtggcattctttgtctttggaatgatcaaaccattgtgcctatcgtttcccttactcatcgacagacaaaacatgttaagaaggattcattaacaagtaa |
103 |
Q |
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| T |
39293965 |
gtggcattctttgtctttggaatgatcaaaccattgtgcctatcgtttcccttactcatcgacagacaaaacatgttaagaaggattcattaacaagtaa |
39293866 |
T |
|
| Q |
104 |
tgtacaaactcttacgtttaaataggaatcaaaataacacgtttaggcagctatatatgactcagtc---agtcaaaagagaaatagatcgatataataa |
200 |
Q |
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| T |
39293865 |
tgtacaaactctaacgtttaaataggaatcaaaataacacgtttaggcagctatatatgactcagtcatgagtcaaaagagaaatagatcgatataataa |
39293766 |
T |
|
| Q |
201 |
agatatgagtacgtataatccttcaattaaaaaatctaaacagaacatgaaattttattagtaatccactaaatatttacgtctc-ctatgactctttct |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39293765 |
agatatgagtacgtataatccttcaattaaaaaatctaaacagaacatgaaattttattagtaatccactaaatatttacgtctcactatgactctttct |
39293666 |
T |
|
| Q |
300 |
aacagcacaacaatttctctgttccagtccttaaaatcttttacttcattcctctcaaattatacgacgtttgacatgtattat |
383 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
39293665 |
aacagcacaacaatttctctgttctagtccttaaaatcttttacttcattcctcacaaattatatgacgtttgacatgtattat |
39293582 |
T |
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