View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11726_high_5 (Length: 365)
Name: NF11726_high_5
Description: NF11726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11726_high_5 |
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| [»] scaffold0060 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 116; Significance: 6e-59; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 173 - 350
Target Start/End: Original strand, 8354857 - 8355033
Alignment:
| Q |
173 |
aaccagcaatttgctttctctatgcagagctataagatnnnnnnntcaaacattaaaaactatagcttagttaagagaatgtgtagtaggcaataataag |
272 |
Q |
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| T |
8354857 |
aaccagcaattttctttctctatgcggagctataagctcacaaa-tcaaatattaaaaactatagcttagttaagagaatgtgtagtaagcaataataag |
8354955 |
T |
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| Q |
273 |
taaaaaccagccaaaactagcaaagctatatcgtagccaagaaatagatagatacttttcccttgtaattgtgaattc |
350 |
Q |
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|||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8354956 |
taaaaaccagccaaaactagcaaaactattgagtagccaagaaatagatagatacttttcccttgtaattgtgaattc |
8355033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 8410402 - 8410513
Alignment:
| Q |
1 |
ttagccacagcaggccaaaaagacatttttctaatttagcaaaatttaaacatttacaaataagcgaaccttacaaactagtgactaagattgaacaagt |
100 |
Q |
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| T |
8410402 |
ttagccacagcaggccaaaaagacatttttctaatttagcaaaatttaaacatttacaaataagcaaaccttacaaactagtgactaagattgaacaagt |
8410501 |
T |
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| Q |
101 |
ataaattgatca |
112 |
Q |
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| T |
8410502 |
ataaattgatca |
8410513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 58 - 166
Target Start/End: Original strand, 8361283 - 8361391
Alignment:
| Q |
58 |
aaataagcgaaccttacaaactagtgactaagattgaacaagtataaattgatc-attatgaataagtgaaccttacaaagctttataagtgtgaatctg |
156 |
Q |
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| T |
8361283 |
aaataagcgaaccttaaatactagtgactaagattgaacaagtataaattgatcaattataaataattgaaccttacaaagc-ttataagtgtgaatctt |
8361381 |
T |
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| Q |
157 |
actaagatag |
166 |
Q |
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|||||||||| |
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| T |
8361382 |
actaagatag |
8361391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 317
Target Start/End: Original strand, 8348823 - 8348966
Alignment:
| Q |
175 |
ccagcaatttgctttctctatgcagagctataagatnnnnnnntcaaacattaaaaactatagcttagttaagagaatgtg--tagtaggcaataataag |
272 |
Q |
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| T |
8348823 |
ccaggaatttgctttctctatgcagagctataagctcacaaa-tcaaatattaaaaactatagcttaattaagagaatgtgtgtagtaggcaataataag |
8348921 |
T |
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| Q |
273 |
taaaaaccagccaaaactagcaaagctatatcgtagccaagaaat |
317 |
Q |
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| T |
8348922 |
taaaaaccatccaaaactagcaaagctgtagactagccaagaaat |
8348966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 8411357 - 8411442
Alignment:
| Q |
58 |
aaataagcgaaccttacaaactagtgactaagattgaacaagtataaattgatcattatgaataagtgaaccttacaaagctttat |
143 |
Q |
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| T |
8411357 |
aaataagtgaaccttaaaaactagtgactaagattaaacaagtataaattgatcattataaataagtgaaccttacaaagctttat |
8411442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8361172 - 8361230
Alignment:
| Q |
1 |
ttagccacagcaggccaaaaagacatttttctaatttagcaaaatttaaacatttacaa |
59 |
Q |
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| T |
8361172 |
ttagccacagcaggccaaaacgacatttttctaatttagcaaaatttaaacatttacaa |
8361230 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 175 - 350
Target Start/End: Original strand, 8410542 - 8410724
Alignment:
| Q |
175 |
ccagcaatttgctttctctatgcagagctataagatnnnnnnntcaaacattaaaaactatagcttagttaagagaatgtgtagtag------gcaataa |
268 |
Q |
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||||||||| |||||||||||||||||||||| | | ||||||||||||||||||| |||| ||||||||||||||||||| ||||||| |
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| T |
8410542 |
ccagcaattcgctttctctatgcagagctata-gctcacaaa-tcaaacattaaaaactatatcttaattaagagaatgtgtagtagctataggcaataa |
8410639 |
T |
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| Q |
269 |
t-------aagtaaaaaccagccaaaactagcaaagctatatcgtagccaagaaatagatagatacttttcccttgtaattgtgaattc |
350 |
Q |
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| T |
8410640 |
taattaataagtaaaaaccagccaaaactagcaaagttatagagtagccaagaa----atagatacctttctcttgtaattgtgaattc |
8410724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 8443196 - 8443248
Alignment:
| Q |
1 |
ttagccacagcaggccaaaaagacatttttctaatttagcaaaatttaaacat |
53 |
Q |
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|||| ||||||||| ||||| ||||||||||||||||| ||||||||||||| |
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| T |
8443196 |
ttagacacagcagggaaaaaaaacatttttctaatttaggaaaatttaaacat |
8443248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0060 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0060
Description:
Target: scaffold0060; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 68637 - 68599
Alignment:
| Q |
17 |
aaaaagacatttttctaatttagcaaaatttaaacattt |
55 |
Q |
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| T |
68637 |
aaaaagacatttttctaatttaggaaaatttaagcattt |
68599 |
T |
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