View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11726_high_6 (Length: 330)
Name: NF11726_high_6
Description: NF11726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11726_high_6 |
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| [»] scaffold0391 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 323
Target Start/End: Complemental strand, 33990327 - 33990022
Alignment:
| Q |
18 |
tcatcaacaacataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990327 |
tcatcaacaacataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgat |
33990228 |
T |
|
| Q |
118 |
ccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgctttcgtgctgt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33990227 |
ccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgctttcgtgctgt |
33990128 |
T |
|
| Q |
218 |
ttcaactatttcagatattttgttcaagacattatgaaatcttgttgtaagggtaataatatgtgtggtggcgctactcatgaatttgagattcctttct |
317 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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| T |
33990127 |
ttcaactatttgagatattttgttcaagacatcatgaaatcttgttgtaagggtaataatatgtgtagtggcgctactcatgaatttgagattccttcct |
33990028 |
T |
|
| Q |
318 |
ctgctt |
323 |
Q |
| |
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|||||| |
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| T |
33990027 |
ctgctt |
33990022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 99 - 306
Target Start/End: Complemental strand, 33973434 - 33973227
Alignment:
| Q |
99 |
atttcttctctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcac |
198 |
Q |
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| T |
33973434 |
atttcttctctgggttgatccaagtgttcattgtaatgctttatatcttgtacaacgggagataaatcctttaagattaacctaaacaatagccttgaac |
33973335 |
T |
|
| Q |
199 |
tttggtgctttcgtgctgtttcaactatttcagatattttgttcaagacattatgaaatcttgttgtaagggtaataatatgtgtggtggcgctactcat |
298 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
33973334 |
tttggttctttcgtgctgtttcaactatttcagatattttgttcaagacatcattaaatcttgttgtaagggtaataatatgtgtcgtggcgctactcat |
33973235 |
T |
|
| Q |
299 |
gaatttga |
306 |
Q |
| |
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|||||||| |
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| T |
33973234 |
gaatttga |
33973227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 28 - 314
Target Start/End: Complemental strand, 33950841 - 33950552
Alignment:
| Q |
28 |
cataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgatccaaatgttc |
127 |
Q |
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|||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||| ||| | || |||||||||||||| ||||||||||| || |
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| T |
33950841 |
cataggaatcattctcagaagaacatgtacatgcactttctcctgcatcattttcttctatcagactatttatttcttctctggggtgatccaaatgatc |
33950742 |
T |
|
| Q |
128 |
attgtattgctttatgtcttgaaccacaagagttaaatccttcaagattgacctcaacaattgccttgcactttggtgctttcgtgctgtttcaactatt |
227 |
Q |
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||||||||||||||| ||||| || || ||| ||||||||| |||||| ||||||| || |||||| |||||||| |||| ||||| ||| || ||| |
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| T |
33950741 |
attgtattgctttatatcttgtacaacgggagataaatcctttaagattaacctcaatgatcgccttgaactttggttcttttgtgctttttgaagaatt |
33950642 |
T |
|
| Q |
228 |
tcagatattttgttcaagacatta------tgaaatcttgttgtaagggtaataatatgtgtggtggcgctactcatgaatttgagattcctt |
314 |
Q |
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| |||||||||||||||||||| | |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||| |
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| T |
33950641 |
tgagatattttgttcaagacatcattaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatgaatttgagattcctt |
33950552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 18 - 169
Target Start/End: Complemental strand, 33959498 - 33959347
Alignment:
| Q |
18 |
tcatcaacaacataggaatcattctcagaagaacatttgcatgcactttcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgat |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| | || ||||| |||||||| |||| |
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| T |
33959498 |
tcatcaacaacataggaatcattctcagaagaacatttgcatgcactttctcctgcatcattttcttctattagactatttatttcctctctggggtgat |
33959399 |
T |
|
| Q |
118 |
ccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaatcctt |
169 |
Q |
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||||||| |||||||||||||||||||||||||||||| ||| ||||||||| |
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| T |
33959398 |
ccaaatgatcattgtattgctttatgtcttgaaccacaggagataaatcctt |
33959347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 71
Target Start/End: Complemental strand, 33973500 - 33973447
Alignment:
| Q |
18 |
tcatcaacaacataggaatcattctcagaagaacatttgcatgcactttcttct |
71 |
Q |
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||||||||||| ||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
33973500 |
tcatcaacaacgtaggaatcattctcaaaagaagatttgcatgcactttcttct |
33973447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 206 - 305
Target Start/End: Complemental strand, 33959349 - 33959247
Alignment:
| Q |
206 |
ctttcgtgctgtttcaactatttcagatattttgttcaagacattatgaaat------cttgttgtaagggtaataatatgtgtggtggcgctactcatg |
299 |
Q |
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|||||||||| ||| || ||||| |||||||||||||||||||| ||||||| |||||||||||||||||||| ||| || |||||||||||| |
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| T |
33959349 |
ctttcgtgctttttgaagtatttgagatattttgttcaagacatcatgaaattgaaatcttgttgtaagggtaataatgtgt---gtagcgctactcatg |
33959253 |
T |
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| Q |
300 |
aatttg |
305 |
Q |
| |
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|||||| |
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| T |
33959252 |
aatttg |
33959247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0391 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: scaffold0391
Description:
Target: scaffold0391; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 66 - 283
Target Start/End: Complemental strand, 10283 - 10066
Alignment:
| Q |
66 |
tcttctgcatcattttcttctaatagagtcttgatttcttctctgggatgatccaaatgttcattgtattgctttatgtcttgaaccacaagagttaaat |
165 |
Q |
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||||||||| |||||||||||| ||| || | ||||||| ||||| || |||| | ||||||||||||||||||||||||||||||| ||||||| |
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| T |
10283 |
tcttctgcaacattttcttctattagtgtgcttatttctttgctggggtggtccatgttttcattgtattgctttatgtcttgaaccacagtagttaaac |
10184 |
T |
|
| Q |
166 |
ccttcaagattgacctcaacaattgccttgcactttggtgctttcgtgctgtttcaactatttcagatattttgttcaagacattatgaaatcttgttgt |
265 |
Q |
| |
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|||||||| |||||||||||| || |||| |||||| | ||||| || |||| || | || |||| |||||||||||| || ||| ||| ||||| |
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| T |
10183 |
ccttcaaggttgacctcaacattttccttatactttgattctttctacctttttccaccaattgagatgttttgttcaagatatcttgatatcgtgttga |
10084 |
T |
|
| Q |
266 |
aagggtaataatatgtgt |
283 |
Q |
| |
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||||| || || |||||| |
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| T |
10083 |
aagggcaacaaaatgtgt |
10066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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