View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11726_high_7 (Length: 255)
Name: NF11726_high_7
Description: NF11726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11726_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 3762999 - 3762778
Alignment:
| Q |
20 |
ttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattttgtt |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3762999 |
ttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattttgtt |
3762900 |
T |
|
| Q |
120 |
cgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctacaa |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
3762899 |
cgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcatgacatactaagtggaaataaccctacaa |
3762800 |
T |
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| Q |
220 |
caattacaattgttcaaccacc |
241 |
Q |
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|||||||||||||||||||||| |
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| T |
3762799 |
caattacaattgttcaaccacc |
3762778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 25 - 241
Target Start/End: Complemental strand, 3752015 - 3751793
Alignment:
| Q |
25 |
aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcat------catcagaaaatgaagaaacttttgattttgt |
118 |
Q |
| |
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||||||| ||||||||||||||||||||||| || ||||||||||| ||||| ||||| |||| ||| |||||| ||||||||||||||||||| |
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| T |
3752015 |
aacattttctcactttgttcttcttccttctcctctcttgcaacactctcacttcaacatcattacaatcattagaaaaacaagaaacttttgattttgt |
3751916 |
T |
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| Q |
119 |
tcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctaca |
218 |
Q |
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| T |
3751915 |
tcgtccaatagaccgcaaattgttaagcctaaacaagaaagaaaaactaagtcatttcagattctattggcatgatatcttgagtgggaaaaatcccact |
3751816 |
T |
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| Q |
219 |
acaattacaattgttcaaccacc |
241 |
Q |
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||||||||||||||| |||||| |
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| T |
3751815 |
gcaattacaattgttccaccacc |
3751793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 20 - 208
Target Start/End: Complemental strand, 3777071 - 3776886
Alignment:
| Q |
20 |
ttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattttgtt |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | ||||| ||||| ||||| || |||| ||| |||||| ||||| || |||||||||||| |
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| T |
3777071 |
ttccaaacatttcctcactttgttcttcttccttcttatctcttgtaacacactcacttc---ttcaacattagaaaaagaagatacctttgattttgtt |
3776975 |
T |
|
| Q |
120 |
cgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaa |
208 |
Q |
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| T |
3776974 |
cgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattatattggcatgacatagttagtggaaa |
3776886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 25 - 217
Target Start/End: Complemental strand, 3755882 - 3755684
Alignment:
| Q |
25 |
aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcac---------atcaacttcatcatcagaaaatgaagaaacttttgattt |
115 |
Q |
| |
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|||| ||| |||||||||||||||||||||| ||||||||||||||| |||| |||| | |||||||||||||||| || |||||||| || |
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| T |
3755882 |
aacacttcatcactttgttcttcttccttcttctttcttgcaacaccgtcactttaacaacatcatcatcatcatcagaaaatggtgacacttttgaatt |
3755783 |
T |
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| Q |
116 |
tgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccct |
215 |
Q |
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||||||||| ||||||||||| || ||| ||||||| ||||||||||||||| ||||| ||||||||||||||||||||| | |||||||| |||||| |
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| T |
3755782 |
tgttcgtcctatagaccgcaaattattaagcctaaa---gaaggaaaaactaagtcatttcagattctactggcacgacatagtgagtggaaaaaaccct |
3755686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 217
Target Start/End: Complemental strand, 3767406 - 3767206
Alignment:
| Q |
20 |
ttccaaacatttcctca---ctttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgatttt |
116 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||| | | | | ||||||||||| |||| || |||||||| |
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| T |
3767406 |
ttccaaacatttcctcatcactttgttcttcttccttctcatatcttgcaacacactctctgcttcaacttcatcagaaaaacaagacacagttgatttt |
3767307 |
T |
|
| Q |
117 |
gttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataacccta |
216 |
Q |
| |
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|||||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| | ||| || ||||| |||||| | |||||||| ||||||| |
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| T |
3767306 |
gttcgtccaatagatcgcaagttgttaggcctaaacaagaaggaaaagctaagtcatttcaaattttattggcatgacatagtgagtggaaaaaacccta |
3767207 |
T |
|
| Q |
217 |
c |
217 |
Q |
| |
|
| |
|
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| T |
3767206 |
c |
3767206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 3781387 - 3781217
Alignment:
| Q |
20 |
ttccaaacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatcagaaaatgaagaaacttttgattttgtt |
119 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| | ||||||||||| ||||| | | | ||||||||||| |||| ||||| ||||||||| |
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| T |
3781387 |
ttcccaacatttcctcactttgttcttcttccttctcatatcttgcaacacactcactacttcaacttcatcagaaaaacaagacactttcgattttgtt |
3781288 |
T |
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| Q |
120 |
cgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggca |
190 |
Q |
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||||| ||||| ||||| |||||||||||||||||||| ||||| ||||| ||||| |||||||| ||||| |
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| T |
3781287 |
cgtccgatagatcgcaaattgttaggcctaaacaagaaagaaaagctaagtcatttcagattctattggca |
3781217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 25 - 232
Target Start/End: Complemental strand, 3746198 - 3745985
Alignment:
| Q |
25 |
aacatttcctcactttgttcttcttccttctactttcttgcaacaccctcacatcaacttcatcatca------gaaaatgaagaaacttttgattttgt |
118 |
Q |
| |
|
|||| ||||||||||| |||||||||||||| | ||||||||||||||||| |||||||||||| || ||||| |||||||||| ||||||||| |
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| T |
3746198 |
aacacttcctcacttttttcttcttccttctcttctcttgcaacaccctcacttcaacttcatcaccatcatttgaaaaagaagaaacttatgattttgt |
3746099 |
T |
|
| Q |
119 |
tcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattctactggcacgacatactaagtggaaataaccctaca |
218 |
Q |
| |
|
|||| ||||||||| ||| |||||| ||||||||| | ||||| ||||| ||||| ||||||| ||||| ||||| | |||||||| |||||||| |
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| T |
3746098 |
tcgttcaatagaccccaaattgttacacctaaacaaccaagaaaagctaagtcatttcagattcttttggcatgacatcatgagtggaaaaaaccctact |
3745999 |
T |
|
| Q |
219 |
acaattacaattgt |
232 |
Q |
| |
|
|||||||| |||| |
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|
| T |
3745998 |
tcaattacagttgt |
3745985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 84 - 215
Target Start/End: Complemental strand, 3771572 - 3771444
Alignment:
| Q |
84 |
tcatcatcagaaaatgaagaaacttttgattttgttcgtccaatagaccgcaagttgttaggcctaaacaagaaggaaaaactaagccattttagattct |
183 |
Q |
| |
|
||||||||||||||||| || |||||||| ||||||||||| ||||||||||| || ||| ||||| ||||||||||||||||| ||||| ||||||| |
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| T |
3771572 |
tcatcatcagaaaatgatgacacttttgaatttgttcgtcctatagaccgcaaattattaagccta---aagaaggaaaaactaagtcatttcagattct |
3771476 |
T |
|
| Q |
184 |
actggcacgacatactaagtggaaataaccct |
215 |
Q |
| |
|
|||||||||| ||| |||||||| |||||| |
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| T |
3771475 |
actggcacgagatagcgagtggaaaaaaccct |
3771444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 245
Target Start/End: Original strand, 25985274 - 25985354
Alignment:
| Q |
165 |
ctaagccattttagattctactggcacgacatactaagtggaaataaccctacaacaattacaattgttcaaccacctttg |
245 |
Q |
| |
|
||||||||||| | |||||| ||||| |||||| | |||||||| |||||| | |||| ||||||||| |||||||||| |
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| T |
25985274 |
ctaagccatttaaaattctattggcatgacatagttagtggaaacaacccttcttcaataccaattgttccaccacctttg |
25985354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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