View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11726_low_1 (Length: 685)

Name: NF11726_low_1
Description: NF11726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11726_low_1
NF11726_low_1
[»] chr3 (3 HSPs)
chr3 (18-435)||(31342176-31342594)
chr3 (446-671)||(31341771-31341996)
chr3 (613-662)||(647214-647263)
[»] chr8 (1 HSPs)
chr8 (613-662)||(478107-478156)
[»] chr5 (6 HSPs)
chr5 (610-662)||(12660400-12660452)
chr5 (610-662)||(26597508-26597560)
chr5 (623-662)||(30222889-30222928)
chr5 (608-662)||(4268181-4268235)
chr5 (613-662)||(8388173-8388222)
chr5 (613-662)||(22767308-22767357)
[»] chr1 (3 HSPs)
chr1 (610-662)||(44602836-44602888)
chr1 (616-662)||(2885313-2885359)
chr1 (613-662)||(51113402-51113451)
[»] chr7 (2 HSPs)
chr7 (616-662)||(29201006-29201052)
chr7 (613-662)||(9328653-9328702)
[»] chr4 (6 HSPs)
chr4 (614-662)||(29655717-29655765)
chr4 (616-662)||(26422653-26422699)
chr4 (613-659)||(37245906-37245952)
chr4 (617-658)||(32577103-32577144)
chr4 (613-662)||(56065716-56065765)
chr4 (55-134)||(49416481-49416558)
[»] chr6 (3 HSPs)
chr6 (623-662)||(28107236-28107275)
chr6 (613-662)||(15606045-15606094)
chr6 (613-662)||(19690930-19690979)
[»] chr2 (7 HSPs)
chr2 (616-662)||(12130689-12130735)
chr2 (613-662)||(88646-88695)
chr2 (613-662)||(9710042-9710091)
chr2 (610-662)||(14827164-14827216)
chr2 (616-656)||(34695961-34696001)
chr2 (616-656)||(34718373-34718413)
chr2 (610-662)||(44017369-44017421)
[»] scaffold0446 (1 HSPs)
scaffold0446 (613-662)||(273-322)


Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 435
Target Start/End: Complemental strand, 31342594 - 31342176
Alignment:
Q  18 gtttttgctttcatggttacagtaatagattgttttaaattggcatagatgaatggatattaatgttgttgtgaaagataatgcaattgatattgtgttg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31342594 gtttttgctttcatggttacagtaatagattgttttaaattggaatagatgaatggatattaatgttgttgtgaaagataatgcaattgatattgtgttg 31342495  T
Q  118 gcctttagagttatatgcattggctgatgtgatgatcaatgaaattggtgagtttggtatcatttttgggtctggaa-caataaaataattgttactatg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  31342494 gcctttagagttatatgcattggctgatgtgatgatcaatgaaattggtgagtttggtatcatttttgggtctggaaacaataaaacaattgttactatg 31342395  T
Q  217 tgcactgctatttggaattaatttataagaattgtgttttcttgtgcttagatgaaagaagacttattggttagggagttgccttctttatttttaggca 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||||||||||||||||    
T  31342394 tgcactgctatttggaattaatttataagaattgtgttttcttgtgcttaggtgttagaagacttattggttagggagttgccttctttatttttaggca 31342295  T
Q  317 ctttgatttgtgcagtggctgtggttcatccaagatcaccctagagattttaaagagaacaaaaataataatcatagctcatccaaaagtgatttatatt 416  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31342294 ctttgatttgtgcagtggctgtggttcatccaagatcaccctagagattttaaagaggacaaaaataataatcatagctcatccaaaagtgatttatatt 31342195  T
Q  417 aagagttgtttggaaccgg 435  Q
    |||||||||||||||||||    
T  31342194 aagagttgtttggaaccgg 31342176  T

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Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 446 - 671
Target Start/End: Complemental strand, 31341996 - 31341771
Alignment:
Q  446 aggaaggactttgaacgactacgtctatattttgaaatatttttgatatttttcaaatcctcttaacnnnnnnncaatcattaaaacggaagaaaccaaa 545  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||    
T  31341996 aggaaggactttgaacgactacgtctatattttgaaatatttttgatatttttcaaatcctcttaaaaaaaaaacaatcattaaaacggaagaaaccaaa 31341897  T
Q  546 cactcaaattttgataccaaatgccatttgacaatgaaaaagtttgcacatctaaaaccagtggtgagaccgggttatcttcgaatctgactccgctact 645  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  31341896 cactcaaattttgataccaaatgccatttgacaatggaaaagtttgcacatctaaaaccagtggtgagaccgggttatcttcgaatctgactccactact 31341797  T
Q  646 ctagtgcaagctctatcctacgtctc 671  Q
    ||||||||||||||||||||||||||    
T  31341796 ctagtgcaagctctatcctacgtctc 31341771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 647263 - 647214
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||| ||||||||||| ||||||||  ||||||||||||||||||||||    
T  647263 gaccgagttatcttcgagtctgactcatctactctagtgcaagctctatc 647214  T

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Target: chr8 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 478156 - 478107
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||||||||||||||||||||  ||||||||||||||||||||||    
T  478156 gaccgggttatcttcgaatctgactctactactctagtgcaagctctatc 478107  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 12660400 - 12660452
Alignment:
Q  610 tgagaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||||| |||||| |||| |||||||| |||||||||||||||||||||||    
T  12660400 tgagaccgtgttatcgtcgagtctgactcagctactctagtgcaagctctatc 12660452  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 26597560 - 26597508
Alignment:
Q  610 tgagaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||||||||| ||||||| || ||||| ||||||||||||||||| |||||    
T  26597560 tgagaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatc 26597508  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Complemental strand, 30222928 - 30222889
Alignment:
Q  623 tcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||||||||||||| ||||||||||||||||| |||||    
T  30222928 tcttcgaatctgactcagctactctagtgcaagcgctatc 30222889  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 608 - 662
Target Start/End: Original strand, 4268181 - 4268235
Alignment:
Q  608 ggtgagaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||| ||||||||| ||||||| || |||||  ||||||||||||||||||||||    
T  4268181 ggtgggaccgggttttcttcgagtccgactcatctactctagtgcaagctctatc 4268235  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 8388173 - 8388222
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| || ||||| ||||||||||||||||| |||||    
T  8388173 gaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatc 8388222  T

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Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 22767357 - 22767308
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| | |||||| | |||||||||||||||||||||    
T  22767357 gaccgggttgtcttcgagtttgactctgatactctagtgcaagctctatc 22767308  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 44602836 - 44602888
Alignment:
Q  610 tgagaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||||||  |||||| ||| ||||||||||||||||||||||||||||    
T  44602836 tgagaccgggttgccttcgagtctaactccgctactctagtgcaagctctatc 44602888  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 662
Target Start/End: Original strand, 2885313 - 2885359
Alignment:
Q  616 cgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||| ||||||| || ||||| |||||||||||||||||||||||    
T  2885313 cgggttgtcttcgagtcagactcagctactctagtgcaagctctatc 2885359  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 51113402 - 51113451
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| || ||||| ||||||||||||||||| |||||    
T  51113402 gaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatc 51113451  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 616 - 662
Target Start/End: Complemental strand, 29201052 - 29201006
Alignment:
Q  616 cgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||| ||||||| |||||||| |||||||||||||||||||||||    
T  29201052 cgggttgtcttcgagtctgactcagctactctagtgcaagctctatc 29201006  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 9328702 - 9328653
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| |||| || |||||||| | |||||||||||||||||||||    
T  9328702 gaccgggttgtcttggagtctgactctgatactctagtgcaagctctatc 9328653  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000004; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 614 - 662
Target Start/End: Complemental strand, 29655765 - 29655717
Alignment:
Q  614 accgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||| ||| ||||||| ||||||| ||||||||||||||||||||||||    
T  29655765 accgtgttgtcttcgagtctgactacgctactctagtgcaagctctatc 29655717  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 662
Target Start/End: Complemental strand, 26422699 - 26422653
Alignment:
Q  616 cgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||| ||||||| |||||||| | |||||||||||||||||||||    
T  26422699 cgggttgtcttcgagtctgactctgatactctagtgcaagctctatc 26422653  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 613 - 659
Target Start/End: Complemental strand, 37245952 - 37245906
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctct 659  Q
    ||||||||| ||||||| |||||||| |||||| |||||||||||||    
T  37245952 gaccgggttgtcttcgagtctgactctgctactttagtgcaagctct 37245906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 617 - 658
Target Start/End: Complemental strand, 32577144 - 32577103
Alignment:
Q  617 gggttatcttcgaatctgactccgctactctagtgcaagctc 658  Q
    ||||| ||||||| |||||||| |||||||||||||||||||    
T  32577144 gggttgtcttcgagtctgactctgctactctagtgcaagctc 32577103  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 56065716 - 56065765
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| || ||||| ||||||||||||||||| |||||    
T  56065716 gaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatc 56065765  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 49416481 - 49416558
Alignment:
Q  55 aattggcatagatgaatggatattaatgttgttgtgaaagataatgcaattgatattgtgttggcctttagagttatatg 134  Q
    |||||| |||||||||||||| |  |  |||||||||| ||| ||||||||||   ||| ||||||||||||||||||||    
T  49416481 aattggtatagatgaatggatgtataccttgttgtgaaggatcatgcaattgac--tgtcttggcctttagagttatatg 49416558  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 623 - 662
Target Start/End: Original strand, 28107236 - 28107275
Alignment:
Q  623 tcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  28107236 tcttcgagtctaactccgctactctagtgcaagctctatc 28107275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 15606094 - 15606045
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||| | || ||||| |||||||||||||||||||||||    
T  15606094 gaccgggttgtcttcaagtccgactcagctactctagtgcaagctctatc 15606045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Complemental strand, 19690979 - 19690930
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||| ||| ||||||| |||||||| |||||| ||||||||||||||||    
T  19690979 gaccgagttgtcttcgagtctgactcagctactttagtgcaagctctatc 19690930  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 616 - 662
Target Start/End: Complemental strand, 12130735 - 12130689
Alignment:
Q  616 cgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||||||||||| ||||||||  |||||||||| |||||||||||    
T  12130735 cgggttatcttcgagtctgactcatctactctagtccaagctctatc 12130689  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 88646 - 88695
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| || |||||  ||||||||||||||||||||||    
T  88646 gaccgggttgtcttcgagtccgactcatctactctagtgcaagctctatc 88695  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 9710042 - 9710091
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| |||||||  | |||||||||||||||||||||    
T  9710042 gaccgggttgtcttcgagtctgactttgatactctagtgcaagctctatc 9710091  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 662
Target Start/End: Original strand, 14827164 - 14827216
Alignment:
Q  610 tgagaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||| || ||| |||| ||||||||||  |||||||||||||||||||||||    
T  14827164 tgagatcgagttgtctttgaatctgacttagctactctagtgcaagctctatc 14827216  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 656
Target Start/End: Complemental strand, 34696001 - 34695961
Alignment:
Q  616 cgggttatcttcgaatctgactccgctactctagtgcaagc 656  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  34696001 cgggttgtcttcgagtccgactccgctactctagtgcaagc 34695961  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 616 - 656
Target Start/End: Complemental strand, 34718413 - 34718373
Alignment:
Q  616 cgggttatcttcgaatctgactccgctactctagtgcaagc 656  Q
    |||||| ||||||| || |||||||||||||||||||||||    
T  34718413 cgggttgtcttcgagtccgactccgctactctagtgcaagc 34718373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 610 - 662
Target Start/End: Complemental strand, 44017421 - 44017369
Alignment:
Q  610 tgagaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    |||||||  ||| ||||||| |||||||||| |||| ||||||||||||||||    
T  44017421 tgagaccaagttgtcttcgagtctgactccgttactttagtgcaagctctatc 44017369  T

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Target: scaffold0446 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0446
Description:

Target: scaffold0446; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 613 - 662
Target Start/End: Original strand, 273 - 322
Alignment:
Q  613 gaccgggttatcttcgaatctgactccgctactctagtgcaagctctatc 662  Q
    ||||||||| ||||||| || ||||| ||||||||||||||||| |||||    
T  273 gaccgggttgtcttcgagtccgactcagctactctagtgcaagcgctatc 322  T

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