View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11726_low_11 (Length: 211)
Name: NF11726_low_11
Description: NF11726
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11726_low_11 |
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| [»] chr5 (10 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 172; Significance: 1e-92; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 4 - 211
Target Start/End: Complemental strand, 29995923 - 29995717
Alignment:
| Q |
4 |
tcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaaccca |
103 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
29995923 |
tcctccatattcaaactagaagaactaatattatgtggaagttcccaattaaagcaatgcacaaattgagctataaccaacttaatcgtaattaaaccca |
29995824 |
T |
|
| Q |
104 |
attgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgggta |
203 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||| |||||||||| || |
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| T |
29995823 |
attgaattccaggacaacgcctacgactagaaccaaatggtatagattcaaactcttgtccgagataattcagttttt-ctcaataaatctctctggata |
29995725 |
T |
|
| Q |
204 |
aaattctt |
211 |
Q |
| |
|
|||||||| |
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|
| T |
29995724 |
aaattctt |
29995717 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30001600 - 30001390
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| |||||||||||| |||||||||||||| ||||| |||||||||||||||| |||||| | || |
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|
| T |
30001600 |
ttctcctccatattcaaattggaaggactaatattatgtggaagttcccagttaaagcaatgcacgaattgagctataaccaacttaaccgtaatcatac |
30001501 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
30001500 |
ccaattgaattccaggacaacgtctacgaccagaaccaaatggtatagattcaaactcttgtccgagataattcatttttttctcaataaatctctctgg |
30001401 |
T |
|
| Q |
201 |
gtaaaattctt |
211 |
Q |
| |
|
||||||||||| |
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| T |
30001400 |
gtaaaattctt |
30001390 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 30007716 - 30007508
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
|||||||||||||||||| | |||| ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
30007716 |
ttctcctccatattcaaattggaaggactaatattatgtggaagttcccagttaaagcaatgcacaaattgagctataaccaacttaacgataattaaac |
30007617 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| | |||||| |||||||||| |
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| T |
30007616 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcatgtccttgataattcattttcttgtcaataaatctctctgg |
30007517 |
T |
|
| Q |
201 |
gtaaaattc |
209 |
Q |
| |
|
||||||||| |
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|
| T |
30007516 |
gtaaaattc |
30007508 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30043282 - 30043492
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
|||||||||||||||||| | || | ||||||||||| |||||||||||| ||||| ||||| | |||||| ||||||||||| |||| |||||||||| |
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|
| T |
30043282 |
ttctcctccatattcaaattggagggactaatattatgtggaagttcccagttaaaacaatggataaattgagctataaccaatttaacagtaattaaac |
30043381 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |||||||||| |
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| T |
30043382 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcatttttttctctacaaatctctctgg |
30043481 |
T |
|
| Q |
201 |
gtaaaattctt |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
30043482 |
gtaaaattctt |
30043492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 29954168 - 29953958
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
|||||||||||||||||| | |||| ||| ||||||| |||||||||||||| ||| |||||||| ||||| || ||||||||||||| || | ||||| |
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|
| T |
29954168 |
ttctcctccatattcaaattggaaggactgatattatatggaagttcccaatcaaaacaatgcaccaattgggcaataaccaacttaacggtcactaaac |
29954069 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
|| ||||||||||||||||||| || || |||||||||||||||| |||||||||||||||||| ||||||||||||| | |||| |||||||||| |
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|
| T |
29954068 |
ccgattgaattccaggacaacgtctgcggccagaaccaaatggtagagattcaaactcttgtccttgataattcattttcttgccaatgaatctctctgg |
29953969 |
T |
|
| Q |
201 |
gtaaaattctt |
211 |
Q |
| |
|
||||||||||| |
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|
| T |
29953968 |
gtaaaattctt |
29953958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 30067799 - 30068009
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
|||||||||||||||||| | | | ||||||||||| || |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||| |
|
|
| T |
30067799 |
ttctcctccatattcaaattgaatggactaatattatgtgaaagttcccaattaaagcaatgcacaaattgagctataaccaacttaacagtagttaaac |
30067898 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||| || ||||||||| | |||||||||||||| ||||||||||||| | |||||| |||||| ||| |
|
|
| T |
30067899 |
ccaattgaattccagggcaacgtctacgaccataatcaaatggtaaactttcaaactcttgtctttgataattcattttcttttcaataaatctctttgg |
30067998 |
T |
|
| Q |
201 |
gtaaaattctt |
211 |
Q |
| |
|
|||||||||| |
|
|
| T |
30067999 |
ataaaattctt |
30068009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 29947207 - 29947029
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
|||||||||||||||||| | |||| |||||||||| |||||||||||||||||||||||| || ||||| |||||||||| ||||| || || |||| |
|
|
| T |
29947207 |
ttctcctccatattcaaattggaaggactaatattacatggaagttcccaattaaagcaatgtaccaattgagctataaccattttaattgtgatcaaac |
29947108 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcatttt |
179 |
Q |
| |
|
||| || ||||||||||||||| |||||||||||||||||||||||||||| ||||| ||||| |||||||||||| |
|
|
| T |
29947107 |
ccatttcaattccaggacaacgtctacgaccagaaccaaatggtatagatttaaacttatgtccttcataattcatttt |
29947029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 29965436 - 29965231
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
||||| |||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| || ||| ||||| |||| |
|
|
| T |
29965436 |
ttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaaagcaatgcaccaattgagctacaacaaatctaaccgtaaccaaac |
29965337 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| | ||||| ||||||||||||| | ||| || |||||||||| |
|
|
| T |
29965336 |
ccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattgctgtccttgataattcattttcttatcactaaatctctctgg |
29965237 |
T |
|
| Q |
201 |
gtaaaa |
206 |
Q |
| |
|
||||| |
|
|
| T |
29965236 |
ataaaa |
29965231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 30009362 - 30009567
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
||||| |||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| ||||| |||| ||| || ||| ||||| |||| |
|
|
| T |
30009362 |
ttctcttccatattcaaattggaagggctaatattatgtggaagttcccaattaaagcaatgcaccaattgagctacaacaaatctaaccgtaaccaaac |
30009461 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtccaagataattcattttttcctcaatagatctctctgg |
200 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| ||||||||||||||||||||||| | ||||| ||||||||||||| | ||| || |||||||||| |
|
|
| T |
30009462 |
ccaattgaatcccaggacaacgtctacgacctgaaccaaatggtatagattcaaattgctgtccttgataattcattttcttatcactaaatctctctgg |
30009561 |
T |
|
| Q |
201 |
gtaaaa |
206 |
Q |
| |
|
||||| |
|
|
| T |
30009562 |
ataaaa |
30009567 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 1 - 164
Target Start/End: Complemental strand, 29945235 - 29945072
Alignment:
| Q |
1 |
ttctcctccatattcaaactagaagaactaatattatctggaagttcccaattaaagcaatgcacaaattgtgctataaccaacttaatcgtaattaaac |
100 |
Q |
| |
|
||||| ||||| |||||| |||||| ||||||||||| |||||||| |||||||||||||||||| ||||| ||||| ||| ||| || | ||| |
|
|
| T |
29945235 |
ttctcatccatgttcaaattagaaggactaatattatatggaagtttccaattaaagcaatgcaccaattgagctatgcttaacctaacagtcctcaaag |
29945136 |
T |
|
| Q |
101 |
ccaattgaattccaggacaacgcctacgaccagaaccaaatggtatagattcaaactcttgtcc |
164 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| | |||||||||||| ||||||||||||||| |
|
|
| T |
29945135 |
ccaattgaattccagggcaacgcctacgaccaaatccaaatggtatactttcaaactcttgtcc |
29945072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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