View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11727_high_11 (Length: 204)
Name: NF11727_high_11
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_high_11 |
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Alignment Details
Target: chr4 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 56231304 - 56231133
Alignment:
| Q |
17 |
aggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaa |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231304 |
aggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaa |
56231205 |
T |
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| Q |
117 |
aggccatcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaata |
188 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
56231204 |
aggccatcatcaaagtaatcagaagcatcaccaccaagagaaagggaaagaacatcaactccatcatgaata |
56231133 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 17 - 188
Target Start/End: Complemental strand, 39189030 - 39188859
Alignment:
| Q |
17 |
aggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtgatgccttccttaactgcgtgaaatgcagcgattgaa |
116 |
Q |
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||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||| |||||| |
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| T |
39189030 |
aggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaacacaacacagtgatgcctttcttaacagcatgaaatgcagcaattgaa |
39188931 |
T |
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| Q |
117 |
aggccatcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatcatgaata |
188 |
Q |
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|| ||||||||||||||||| |||| || ||||||||| | ||||||||||||||| |||||||||||| |
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| T |
39188930 |
agagcatcatcaaagtaatcaacagcaggacttccaagagatatggaaagaacatcaaccccatcatgaata |
39188859 |
T |
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