View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11727_high_5 (Length: 326)
Name: NF11727_high_5
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_high_5 |
 | |
|
| [»] scaffold0491 (2 HSPs) |
| |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr5 (3 HSPs) |
| |
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| [»] chr4 (3 HSPs) |
| |
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| [»] chr3 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 264; Significance: 1e-147; HSPs: 14)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 19 - 318
Target Start/End: Original strand, 1550544 - 1550843
Alignment:
| Q |
19 |
atcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| || || |
|
|
| T |
1550544 |
atcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctagtagatacatctctatgcactattggagcagtacaatc |
1550643 |
T |
|
| Q |
119 |
atgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtg |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |
|
|
| T |
1550644 |
atgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccacagcttctacatcgtcatacaagacagtg |
1550743 |
T |
|
| Q |
219 |
aacaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctg |
318 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1550744 |
aacaagcttcctctctccatgtactgatagatcaaaaacatgattctcttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctg |
1550843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 1541311 - 1541617
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
1541311 |
tcgagctgtgccaaagtcagacacactagcctgccactcagagtttagcaagatattgctagtagatacatctcaatgcactattggagcagtgcaatca |
1541410 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| | | |||||| ||||| |||||||||| ||||||||||| | | ||||||||| || |
|
|
| T |
1541411 |
tgatgaagatatgaaagagcaaatgcaactcctttaacagtgttgacccttttcctccacttgaattccacggcttctacatcatcatacaagacagaga |
1541510 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1541511 |
ataagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatgtcggtgctttatttctga |
1541610 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
1541611 |
taatatt |
1541617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 26 - 326
Target Start/End: Complemental strand, 1596369 - 1596069
Alignment:
| Q |
26 |
tgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattcatgatga |
125 |
Q |
| |
|
||||||||||||| | |||||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596369 |
tgtgccaaagtcacaaacactagcatgccattcagagtttagtaagatattgctactagatacatctctatgcactattggagtagtgcattcatgatga |
1596270 |
T |
|
| Q |
126 |
agatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagc |
225 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||| ||||||| |||||||||| ||||||||||| | | ||||||||| ||||| || |
|
|
| T |
1596269 |
agatatgaaagagcaaatgcaattcctttaacagtgttaacccttgttctccacttgaattccacggcttctacatcatcatacaagacagagaacaggc |
1596170 |
T |
|
| Q |
226 |
ttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatat |
325 |
Q |
| |
|
||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1596169 |
ttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgataatat |
1596070 |
T |
|
| Q |
326 |
t |
326 |
Q |
| |
|
| |
|
|
| T |
1596069 |
t |
1596069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 1106318 - 1106012
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
|||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
1106318 |
tcgagctgtgccaaagtcagcgacactggcctgccactcagagtttagcaagatattgctactagatacatctctatgcacgattggagcagtgcaatca |
1106219 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||| |||| |||||||||||||||||| ||||||||||| | | |||||| || || |
|
|
| T |
1106218 |
tgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaacccttgttctccaattgaattccacggcttctacatcatcatacaagatagaga |
1106119 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1106118 |
acaggcttcctttctccatgtactgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctga |
1106019 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
1106018 |
taatatt |
1106012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 1604705 - 1604399
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||||||||||||||||| | |||||||||| ||||||| |||||||||| |||||||||||||||||||||||||||| ||||||| |||||| ||| |
|
|
| T |
1604705 |
tcgagctgtgccaaagtcacaaacactagcctgccactcatagtttagcaatatattgctactagatacatctctatgcatgattggagcagtgcaatca |
1604606 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||| |||||||||||| |||||||||| ||||||||||| | | ||||||||| || |
|
|
| T |
1604605 |
tgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaaccctttttctccacttgaattccacggcttctacatcatcatacaagacagaga |
1604506 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
1604505 |
acaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctga |
1604406 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
1604405 |
taatatt |
1604399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 1088969 - 1088663
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
|||||||||||||||||| | |||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| ||||| ||| |
|
|
| T |
1088969 |
tcgagctgtgccaaagtccgcgacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcggtgcaatca |
1088870 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||| || ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||||||||| | | ||||||||| || |
|
|
| T |
1088869 |
ggatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttctacatcatcatacaagacagaga |
1088770 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
1088769 |
acaagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctga |
1088670 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
1088669 |
taatatt |
1088663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 1557255 - 1557561
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||||||||||||||||| | |||||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||||| | |||| ||| |
|
|
| T |
1557255 |
tcgagctgtgccaaagtcacaaacactagcctgccactcagagttaacaaatatattgctactagatacatctctatgcactattggagcattgcaatca |
1557354 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
||||||||||| || ||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||| |||||| ||||| | | ||||||||| || |
|
|
| T |
1557355 |
tgatgaagataagatagagcaaatgcaactcctttaacagtgttaaccctttttctccaattgaattccacagcttccacatcatcatacaagacagaga |
1557454 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
1557455 |
acaagcttcctttctccatgtattgatatatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacgatatgtttgtgctttatttctga |
1557554 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
1557555 |
taatatt |
1557561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 2321511 - 2321205
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||||||| ||||||||||| ||||||| | ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| || || ||| |
|
|
| T |
2321511 |
tcgagctgttccaaagtcagaaacactaggatgccactcagagtttagcaagatattgctggtagatacatctctgtgcactattggaggggtacaatca |
2321412 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||| || |||| |||| ||||||||| ||| |||||||||||||||||||||||| || ||| |||| | | ||||||| | || |
|
|
| T |
2321411 |
tgatgaagatatgataggccaaaggcaacccctttaacaacattaagcctttttctccaattgaattccatggcctctgcatcatcatacaagacggaga |
2321312 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
|||| ||||||||||||||||| || |||||||||||||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||||| |
|
|
| T |
2321311 |
acaaacttcctctctccatgtaatggtagatcaaaaacatgattcttttgtgcaagcaaaatccataaagcttcacaatatttcggtgctttatttctga |
2321212 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
2321211 |
taatatt |
2321205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 20 - 326
Target Start/End: Original strand, 3955303 - 3955609
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||||| ||||||||||||| ||||||| || ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
3955303 |
tcgagctatgccaaagtcagaaacactaggctgccattctgagtttagcaagatattgctagtagatacatctctatgcactattggagaggtgaaatca |
3955402 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||| ||| ||| |||||| ||||||| ||||| || ||||| ||||| | | |||||| | || |
|
|
| T |
3955403 |
tgatgaagatatgatagagcagatgcaactcctttaatggtgttaacccttttcctccaatcgaattttatggcttcgacatcatcatgcaagacggaga |
3955502 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||||||||||| | ||||| || ||||||||||||||||| | |||||| ||||| || ||||||| |||||||||||||| || ||||||||||||||| |
|
|
| T |
3955503 |
acaagcttcctttttccatatactgatagatcaaaaacataactcttttatgcaaacaaaatccataaagcttcacaatatttctgtgctttatttctga |
3955602 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
3955603 |
taatatt |
3955609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 2337908 - 2337602
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||| ||||||||||||||||||| | ||||||||||||||||||| || | || ||||| ||| |
|
|
| T |
2337908 |
tcgagatgtgccaaagtcagaaacactaggcttccactccgagtttagcaagatattgccagtagatacatctctatgcacaatggcaggggtgcaatca |
2337809 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||| | ||| ||||||||||||||||||||||| ||||| || || | | ||||| ||| || |
|
|
| T |
2337808 |
tgatgaagatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttcaacttcatcatacaagccagaga |
2337709 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||||||| ||| |||||||||| | ||||||||||||||||||||| |||| | |||||||||| ||||||||| ||||||||||||||||| ||||| |
|
|
| T |
2337708 |
acaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatatgtcggtgctttatatctga |
2337609 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
2337608 |
taatatt |
2337602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 20 - 326
Target Start/End: Complemental strand, 2330009 - 2329703
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||| ||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| || | || ||||| ||| |
|
|
| T |
2330009 |
tcgagatgtgccaaagtcagaaacactaggcttccactcagagtttagcaagatattgcccgtagatacatctctatgcacaatggcaggggtgcaatca |
2329910 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||| ||| ||||||||| ||||||| | ||| ||||||||||||||||||||||| ||||| | || | | ||||||||| || |
|
|
| T |
2329909 |
tgatgaagatatgatagaccaaatgcaacacctttaataacattaaccctttttctccaattgaattccacggcttcaccttcatcatacaagacagaga |
2329810 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctga |
319 |
Q |
| |
|
||||||| ||| |||||||||| | ||||||||||||||||||||| |||| | |||||||||| ||||||||| ||||| ||||||||||| ||||| |
|
|
| T |
2329809 |
acaagctacctttctccatgtactcgtagatcaaaaacatgattcttctgtggagacagaatccataaagcttcacgatatgccggtgctttatatctga |
2329710 |
T |
|
| Q |
320 |
taatatt |
326 |
Q |
| |
|
||||||| |
|
|
| T |
2329709 |
taatatt |
2329703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 20 - 180
Target Start/End: Complemental strand, 3852821 - 3852661
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
||||||| | ||||||||||| ||||||| || ||| || |||||||| |||||||||||| |||||||||||||||||||||||||| ||| | ||| |
|
|
| T |
3852821 |
tcgagctataccaaagtcagaaacactaggctgccattccgagtttagaaagatattgctagtagatacatctctatgcactattggaaaggtgaaatca |
3852722 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaat |
180 |
Q |
| |
|
|||||||||||||| |||||| |||||| |||||||||| || |||||||||||||||||| |
|
|
| T |
3852721 |
tgatgaagatatgatagagcagatgcaactcctttaacaatgttaatcctttttctccaat |
3852661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 30792477 - 30792318
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattc-tt |
266 |
Q |
| |
|
||||||||||||||||||| || | |||||||||| | | |||| ||| |||| |||||| | |||| | |||||||||||||||||||| ||||| || |
|
|
| T |
30792477 |
ctttttctccaattgaatttcacaacttctacatcatcatacaaaacaaagaactagcttcttttctctacgtattgatagatcaaaaacacgattcttt |
30792378 |
T |
|
| Q |
267 |
ttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
|||||||||||||||| || |||||| ||||||| | ||||||||||| |||||||||| |
|
|
| T |
30792377 |
ttgtgcaagcagaatctataaagcttaacaatatttatgtgctttatttatgataatatt |
30792318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 9532045 - 9532202
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| | | |||| | | |||||| |||||| |||| | ||||||||||||||||||||||||||||| |
|
|
| T |
9532045 |
ctttttctccaattgaattccacaacttctacatcatcatacaaaaacgagaacaaacttcctttctc-acgtattgatagatcaaaaacatgattcttt |
9532143 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
||| ||| || ||||||| |||||| ||||||| | ||| ||||||| | |||||||| |
|
|
| T |
9532144 |
tgtacaatcataatccataaagcttaacaatatttatgtgatttattttttataatatt |
9532202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 18749007 - 18749305
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
|||||||||||| |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
18749007 |
tcgagctgtgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatca |
18749106 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||||||| ||||||||||| | | ||||||||| || |
|
|
| T |
18749107 |
tgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattccatggcttctacatcatcatacaagacagaga |
18749206 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctg |
318 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
|
|
| T |
18749207 |
ataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtttgtgctttatttctg |
18749305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 18739083 - 18739388
Alignment:
| Q |
21 |
cgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattcat |
120 |
Q |
| |
|
|||||| |||| |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
18739083 |
cgagctatgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatcat |
18739182 |
T |
|
| Q |
121 |
gatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaa |
220 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||| ||| |||||| ||||| |||||||||| ||| |||||| | | ||||||||| ||| |
|
|
| T |
18739183 |
gatgaagatatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaa |
18739282 |
T |
|
| Q |
221 |
caagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgat |
320 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18739283 |
caagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgat |
18739382 |
T |
|
| Q |
321 |
aatatt |
326 |
Q |
| |
|
|||||| |
|
|
| T |
18739383 |
aatatt |
18739388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 18744047 - 18744352
Alignment:
| Q |
21 |
cgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattcat |
120 |
Q |
| |
|
|||||| |||| |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
18744047 |
cgagctatgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatcat |
18744146 |
T |
|
| Q |
121 |
gatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaa |
220 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||| ||| |||||| ||||| |||||||||| ||| |||||| | | ||||||||| ||| |
|
|
| T |
18744147 |
gatgaagatatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaa |
18744246 |
T |
|
| Q |
221 |
caagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgat |
320 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
18744247 |
caagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgat |
18744346 |
T |
|
| Q |
321 |
aatatt |
326 |
Q |
| |
|
|||||| |
|
|
| T |
18744347 |
aatatt |
18744352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 18723355 - 18723653
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
|||||||||||| |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
18723355 |
tcgagctgtgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatca |
18723454 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||| ||| ||||||||||| | | ||||||||| || |
|
|
| T |
18723455 |
tgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaatttcatggcttctacatcatcatacaagacagaga |
18723554 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctg |
318 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
18723555 |
ataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcactatatgtttgtgctttatttctg |
18723653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: scaffold0491
Description:
Target: scaffold0491; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 21 - 326
Target Start/End: Original strand, 962 - 1267
Alignment:
| Q |
21 |
cgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattcat |
120 |
Q |
| |
|
|||||| |||| |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
962 |
cgagctatgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatcat |
1061 |
T |
|
| Q |
121 |
gatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaa |
220 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||| |||| ||| |||||| ||||| |||||||||| ||| |||||| | | ||||||||| ||| |
|
|
| T |
1062 |
gatgaagatatgaaaaagcaaatgcaactcctttaatagtgttaacccttttcctccacttgaattccacgacttttacatcatcatacaagacagagaa |
1161 |
T |
|
| Q |
221 |
caagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgat |
320 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1162 |
caagcttcctttctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccataaagcttcacaatatgtcggtgctttatttctgat |
1261 |
T |
|
| Q |
321 |
aatatt |
326 |
Q |
| |
|
|||||| |
|
|
| T |
1262 |
aatatt |
1267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0491; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 20 - 318
Target Start/End: Original strand, 5848 - 6146
Alignment:
| Q |
20 |
tcgagctgtgccaaagtcagagacactagccttccactcagagtttagcaagatattgctactagatacatctctatgcactattggagtagtgcattca |
119 |
Q |
| |
|
|||||||||||| |||||| | ||||| |||| |||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
5848 |
tcgagctgtgccgaagtcacaaacactggcctgccactcagagtttagcaagatattgctagtagatacatctcgatgcactattggagcagtgcaatca |
5947 |
T |
|
| Q |
120 |
tgatgaagatatgaaagagcaaatgcaattcctttaacagtgctaatcctttttctccaattgaattccatagcttctacatcgttaaacaagacagtga |
219 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||| ||| ||||||||||| ||||||| || ||||||||||| | | ||||||||| || |
|
|
| T |
5948 |
tgatgaagatatgaaagagcaaatgcaactcctttaatagtgttaactctttttctccacttgaattgcagggcttctacatcatcatacaagacagaga |
6047 |
T |
|
| Q |
220 |
acaagcttcctctctccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctg |
318 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||| |||||||||||||| |
|
|
| T |
6048 |
ataagcttcctctatccatgtattgatagatcaaaaacatgattcttttgtgcaagcagaaaccataaagcttcacgatatgtttgtgctttatttctg |
6146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 19250577 - 19250420
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||| | | |||| || | ||||||||||| | | || ||||||||||||||||||||||||||||||| |
|
|
| T |
19250577 |
ctttttctccaattgaattccacaacttctacatcatcatacaaaaccgagaacaagcttcatttttc-atgtattgatagatcaaaaacatgattcttt |
19250479 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
|||||||||||||||||| |||||| ||||||| | ||| ||||| | |||||||||| |
|
|
| T |
19250478 |
tgtgcaagcagaatccataaagcttaacaatatttatgtgttttatatatgataatatt |
19250420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 41668784 - 41668942
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||| | | |||| || | |||||| ||| || | | ||||||| ||||||| |||||||| ||||||| |
|
|
| T |
41668784 |
ctttttctgcaattgaattccacagcttctaaatcctcatacaaaactgagaacaaactttcttttttcatgtatcgatagattaaaaacattattcttt |
41668883 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| | |||||||||| | |||||||| |
|
|
| T |
41668884 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttattttttataatatt |
41668942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 71; Significance: 4e-32; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 36620780 - 36620622
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||| |||||||| ||| | | |||| || | |||||| ||| |||| | ||||||||||||||| |||||||||||||||| |
|
|
| T |
36620780 |
ctttttctgcaattgaattccacagcttctaaatcctcatacaaaaccgagaacaaactttctcttttcatgtattgatagattaaaaacatgattcttt |
36620681 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
36620680 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatatt |
36620622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 39102224 - 39102382
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| ||| | | |||| || | |||||| ||| |||| | |||||||||||| || ||||||||| |||||| |
|
|
| T |
39102224 |
ctttttctgcaattgaattccacaacttctaaatcctcatacaaaaccgagaacaaactttctcttttcatgtattgatatattaaaaacatgcttcttt |
39102323 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
39102324 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatatt |
39102382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 8873030 - 8873189
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| ||| | | |||| | | |||||| ||| || | | ||||||||||||||| |||||||||||||||| |
|
|
| T |
8873030 |
ctttttctgcaattgaattccacatcttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttt |
8873129 |
T |
|
| Q |
268 |
tgtgcaagc-agaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
||||||||| | ||||||| |||||| | ||||| | |||||||||| | |||||||| |
|
|
| T |
8873130 |
tgtgcaagcaaaaatccataaagcttaataatatttatctgctttattttttataatatt |
8873189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 168 - 326
Target Start/End: Original strand, 42977710 - 42977868
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||| ||||| ||||||| |||||||| ||| | | |||| || | |||||| ||| || | | ||||||||||||||| |||||||||||||||| |
|
|
| T |
42977710 |
ctttttctgcaattaaattccacagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttt |
42977809 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
42977810 |
tgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatatt |
42977868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 168 - 300
Target Start/End: Original strand, 48712369 - 48712501
Alignment:
| Q |
168 |
ctttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttt |
267 |
Q |
| |
|
|||||||| ||||||||||||| | |||||| ||| | | |||| | | |||||| ||| || | | ||||||||||||||| |||| |||||||||| |
|
|
| T |
48712369 |
ctttttctgcaattgaattccacaacttctaaatcctcatacaaaatcgagaacaaactttcttttttcatgtattgatagattgaaaatatgattcttt |
48712468 |
T |
|
| Q |
268 |
tgtgcaagcagaatccatgaagcttcacaatat |
300 |
Q |
| |
|
|||||||||| ||||||| |||||| ||||||| |
|
|
| T |
48712469 |
tgtgcaagcaaaatccataaagcttaacaatat |
48712501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 236 - 277
Target Start/End: Complemental strand, 54123025 - 54122984
Alignment:
| Q |
236 |
catgtattgatagatcaaaaacatgattcttttgtgcaagca |
277 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
54123025 |
catgtattgatagattaaaaacatgattcttttgtgcaagca |
54122984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 236 - 326
Target Start/End: Complemental strand, 31658124 - 31658034
Alignment:
| Q |
236 |
catgtattgatagatcaaaaacatgattcttttgtgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||| ||||||| | |||||||||| |||||||||| |
|
|
| T |
31658124 |
catgtattgatagattaaaaacatgattcttttgtgcaagcaaaatccataaagcttaacaatatttatctgctttatttttgataatatt |
31658034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 170 - 326
Target Start/End: Complemental strand, 1257984 - 1257828
Alignment:
| Q |
170 |
ttttctccaattgaattccatagcttctacatcgttaaacaagacagtgaacaagcttcctctctccatgtattgatagatcaaaaacatgattcttttg |
269 |
Q |
| |
|
|||||| |||||||||||| |||||||| ||| | | |||| || | |||||| ||| || | | ||||||||||||||| |||||||||||||||||| |
|
|
| T |
1257984 |
ttttctgcaattgaattcctcagcttctaaatcctcatacaaaaccgagaacaaactttcttttttcatgtattgatagattaaaaacatgattcttttg |
1257885 |
T |
|
| Q |
270 |
tgcaagcagaatccatgaagcttcacaatatgtcggtgctttatttctgataatatt |
326 |
Q |
| |
|
||||| || ||| ||| ||| || ||||||| | |||||||||| |||||||||| |
|
|
| T |
1257884 |
tgcaaacaaaattcataaagtttaacaatatttatctgctttatttttgataatatt |
1257828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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