View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11727_high_8 (Length: 246)
Name: NF11727_high_8
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_high_8 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold0702 (1 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-128; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-128
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 18343626 - 18343396
Alignment:
| Q |
1 |
tacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343626 |
tacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaa |
18343527 |
T |
|
| Q |
101 |
gcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18343526 |
gcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaa |
18343427 |
T |
|
| Q |
201 |
tgtcacgaaatgttcgccgaggtgggaaaat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
18343426 |
tgtcacgaaatgttcgccgaggtgggaaaat |
18343396 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 9 - 104
Target Start/End: Original strand, 50593601 - 50593696
Alignment:
| Q |
9 |
tgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct |
104 |
Q |
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|||||||||||| ||||||| ||| ||||| |||||||||||| |||||||||||| | ||||||||||| ||||| ||| ||| ||||||||| |
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| T |
50593601 |
tgtaatagagatagaattgataaacaaccactaactataacccccaaagaaccagatccaataaacaacatcaaggaaaaattaaaagaaaagcct |
50593696 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 163743 - 163973
Alignment:
| Q |
1 |
tacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
163743 |
tacggttctgtaatagagatggaattgagaaataactatcaactataaccccaaaagaaccagattccgcaaacaacatcgaggaagaatgaaaggaaaa |
163842 |
T |
|
| Q |
101 |
gcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaa |
200 |
Q |
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|||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
163843 |
gcctatcgaggtaatacaatttccttcgaaaaatatgttctttaggcacttgagcccgcttggatcacatctagacaaatagaagtagggcgatgggcaa |
163942 |
T |
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| Q |
201 |
tgtcacgaaatgttcgccgaggtgggaaaat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
163943 |
tgtcacgaaatgttcgccgaggtgggaaaat |
163973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 34 - 189
Target Start/End: Complemental strand, 278312 - 278157
Alignment:
| Q |
34 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
133 |
Q |
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||||||| ||||||||||||||||||||||||| || ||||||||| |||||||||||||||||||| ||| ||||| ||| |||| || || | | |
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| T |
278312 |
aaccatcgactataaccccaaaagaaccagatttcgcaaacaacatagaggaagaatgaaaggaaaatccttccgaggcaatcgtatttgttttggtaga |
278213 |
T |
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| Q |
134 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagg |
189 |
Q |
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||||||||||| |||||||| |||||||||||||| | ||||| ||||||||||| |
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| T |
278212 |
tatgctcttcaagcacttgaacccgcttggatcacggcgagacagatagaagcagg |
278157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 6873 - 7070
Alignment:
| Q |
34 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
133 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6873 |
aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
6972 |
T |
|
| Q |
134 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
6973 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaat |
7070 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 34 - 231
Target Start/End: Original strand, 35194958 - 35195155
Alignment:
| Q |
34 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
133 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35194958 |
aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
35195057 |
T |
|
| Q |
134 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaat |
231 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||| |
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| T |
35195058 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaat |
35195155 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 5 - 225
Target Start/End: Original strand, 86 - 306
Alignment:
| Q |
5 |
gttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct |
104 |
Q |
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|
|||||||| ||||||||||||| | ||| || ||||||||||||||||||||||||| |||| |||||||||||| ||||||||||||| || | | | | |
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| T |
86 |
gttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaagaacccgatttcgtaaacaacatagaggaagaatgaaggggatatctt |
185 |
T |
|
| Q |
105 |
atcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtc |
204 |
Q |
| |
|
||||||||||| |||| ||||| | |||||||||||| |||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||| | |
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| T |
186 |
atcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggattacatctagacaaatagaagcggggcgccgcgcaatgac |
285 |
T |
|
| Q |
205 |
acgaaatgttcgccgaggtgg |
225 |
Q |
| |
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||||||||| ||||| ||||| |
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| T |
286 |
acgaaatgtacgccgtggtgg |
306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 9 - 62
Target Start/End: Complemental strand, 54630229 - 54630176
Alignment:
| Q |
9 |
tgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaacca |
62 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
54630229 |
tgtaatagagatggaattgagaaataactatcaactataacaccaaaagaacca |
54630176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 149 - 225
Target Start/End: Complemental strand, 5478497 - 5478421
Alignment:
| Q |
149 |
cttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg |
225 |
Q |
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|||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||| |
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| T |
5478497 |
cttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtgg |
5478421 |
T |
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