View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11727_low_1 (Length: 915)
Name: NF11727_low_1
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 512; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 43 - 734
Target Start/End: Original strand, 48596807 - 48597484
Alignment:
| Q |
43 |
tgaacaatacaattgtggtaataataattctacgttacagatgttcttacgctttggccaatctttcgatataattataacaatatatagtaataatacg |
142 |
Q |
| |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
48596807 |
tgaacaatacaattgtggtaataataattctatgttacagatgttcttacgctttggccattctttcgatataattataacaatatatagtaataatacg |
48596906 |
T |
|
| Q |
143 |
attca-ttgtactatggtttaattctgttacttaatataaaaagttaggcaaacactttttgggcatacaccatgagaaaaagagatctagaagagtagt |
241 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
48596907 |
attcagttgtactatggtttaattctgttacttaatataaaaagttaggcaaacaccttttgggcatacaccatgagaaaaagagatctagaagagtggt |
48597006 |
T |
|
| Q |
242 |
atgatacggatttgataaattggtgatgaggtatgaagattgatatagataaaataaggtgttaaataaataaatgagaatatcatatgcacaaatatta |
341 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
48597007 |
atgatacgaatttgataaattggtgatgaggtatgaagatagatatagataaaataaggtgttaaataaataaataagaatatcatatgcataaatatta |
48597106 |
T |
|
| Q |
342 |
ttgttgattttttaacaatttttctatggaactaaatactatatattttttagatggcaattgcaacaaaaggttggtagtgttaccacttaccaatgta |
441 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
48597107 |
ttgttgattttttaacaatttttctatggaactaaatactatatattatttagatggcaattgcaacaaaaggttggtagtg-------ttaccaatgta |
48597199 |
T |
|
| Q |
442 |
atcaaagttatttatttatcttttaccatgtatgtcatatctataacataaatagtagaaaataaataaataattttgattggtgtcaaattac--gtat |
539 |
Q |
| |
|
|||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||| |
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|
| T |
48597200 |
atcaaaattatttatttatcttttatcttgtatgtcatatctataacataaatagtagaaaataaataaataaatttgattggtgtcaaatcacgtgtat |
48597299 |
T |
|
| Q |
540 |
aactctactcactttattgataggtaaataagagttatcatttctttacttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncg |
639 |
Q |
| |
|
||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
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| T |
48597300 |
aactctactcactttattg---------taagagatgtcatttctttacttggtgccaaagtgtatatttttgttatacaattcactatcg-aaaaaacg |
48597389 |
T |
|
| Q |
640 |
gtagggtatactttgaaaagttattaacagttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaa |
734 |
Q |
| |
|
|||||| |||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48597390 |
gtagggcatactttgaaaatttattaacggttatccaaaatataacgccatgcatataagtttgattcacaacacttctcaattgtgcattcaaa |
48597484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 490 - 907
Target Start/End: Original strand, 48591668 - 48592086
Alignment:
| Q |
490 |
taaatagtagaaaataaataaataattttgattggtgtcaaattacgt--ataactctactcactttattgataggtaaataagagttatcatttcttta |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
48591668 |
taaatagtagaaaataaataaataattttgattggtgtcaaatcacgtgtataactctactcactttattgataggtaaataagagttgtcatttcttta |
48591767 |
T |
|
| Q |
588 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgc |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
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|
| T |
48591768 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgaaaaaa-cggtagggcatactttgaaaagttattaacagttatccaaaatataaggc |
48591866 |
T |
|
| Q |
688 |
catgcatataagtttgattcacaacacttctcaattgtgcattcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
787 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
48591867 |
catgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
48591966 |
T |
|
| Q |
788 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
887 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48591967 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
48592066 |
T |
|
| Q |
888 |
taattggacatcttcatctc |
907 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48592067 |
taattggacatcttcatctc |
48592086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 490 - 907
Target Start/End: Original strand, 48601363 - 48601781
Alignment:
| Q |
490 |
taaatagtagaaaataaataaataattttgattggtgtcaaattacgt--ataactctactcactttattgataggtaaataagagttatcatttcttta |
587 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
48601363 |
taaatagtagaaaataaataaataattttgattggtgtcaaatcacgtgtataactctactcactttattgataggtaaataagagttgtcatttcttta |
48601462 |
T |
|
| Q |
588 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgnnnnnnncggtagggtatactttgaaaagttattaacagttatccaaaatataacgc |
687 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
48601463 |
cttggtgccaaagtgtatatttttgttatacgattcactatcgaaaaaa-cggtagggcatactttgaaaagttattaacagttatccaaaatataaggc |
48601561 |
T |
|
| Q |
688 |
catgcatataagtttgattcacaacacttctcaattgtgcattcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
787 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601562 |
catgcatataagtttgaatcacaacacttctcaattgtgcattcaaagtgaataaaccaatatgatttcccattccttctcattagctatgattttgctc |
48601661 |
T |
|
| Q |
788 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
887 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48601662 |
ctatttcttttcatttttcagcttctctcttacttaaagagaaacaagaagttgcatgcacgattaccacctcaccctccaagtccaccagcaataccaa |
48601761 |
T |
|
| Q |
888 |
taattggacatcttcatctc |
907 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
48601762 |
taattggacatcttcatctc |
48601781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 48591354 - 48591479
Alignment:
| Q |
2 |
cgatatgataaatttcagtgtggttgttgttgtagtataaatgaacaatacaattgtggtaataataattctacgttacagatgttcttacgctttggcc |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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|
| T |
48591354 |
cgatatgattaatttcagtgtggttgttgttgtagtataaatgaacaatacaattgtggtaataataattctatgttacagatgttcttacgcattggcc |
48591453 |
T |
|
| Q |
102 |
aatctttcgatataattataacaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48591454 |
aatctttcgatataattataacaata |
48591479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 2 - 127
Target Start/End: Original strand, 48601049 - 48601174
Alignment:
| Q |
2 |
cgatatgataaatttcagtgtggttgttgttgtagtataaatgaacaatacaattgtggtaataataattctacgttacagatgttcttacgctttggcc |
101 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
|
|
| T |
48601049 |
cgatatgattaatttcagtgtggttgttgttgtagtataaatgaacaatacaattgtggtaataataattctatgttacagatgttcttacgcattggcc |
48601148 |
T |
|
| Q |
102 |
aatctttcgatataattataacaata |
127 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
48601149 |
aatctttcgatataattataacaata |
48601174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 485 - 530
Target Start/End: Complemental strand, 26532813 - 26532768
Alignment:
| Q |
485 |
taacataaatagtagaaaataaataaataattttgattggtgtcaa |
530 |
Q |
| |
|
|||||||| |||||||| | |||||||||||||||||||||||||| |
|
|
| T |
26532813 |
taacataagtagtagaagacaaataaataattttgattggtgtcaa |
26532768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 485 - 530
Target Start/End: Original strand, 15882690 - 15882735
Alignment:
| Q |
485 |
taacataaatagtagaaaataaataaataattttgattggtgtcaa |
530 |
Q |
| |
|
||||||||||| ||||| | |||||||| ||||||||||||||||| |
|
|
| T |
15882690 |
taacataaataatagaagacaaataaatgattttgattggtgtcaa |
15882735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 729 - 907
Target Start/End: Complemental strand, 23232421 - 23232246
Alignment:
| Q |
729 |
ttcaaaacgaataaaccaatatgatttcccattccttctcattagctatgattttgctcctatttcttttcatttttcagcttctctcttacttaaagag |
828 |
Q |
| |
|
|||||| | |||||| ||| |||||||| |||||||||| ||||||||||||| ||||||| |||||||| || | | ||| |||| ||| ||||| |
|
|
| T |
23232421 |
ttcaaagctaataaaacaagatgatttctcattccttcttattagctatgattgtgctccttcttcttttccttctcccacttttctccgtctttaagag |
23232322 |
T |
|
| Q |
829 |
aaacaagaagtcgcatgcacgattaccacctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
907 |
Q |
| |
|
||||||||| || || ||| ||||| |||| ||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
23232321 |
aaacaagaaatcacaaccacatttacc-cctc--cctccaagtccaccaacaataccaataattggacatcttcatctc |
23232246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 856 - 907
Target Start/End: Complemental strand, 23224964 - 23224913
Alignment:
| Q |
856 |
acctcaccctccaagtccaccagcaataccaataattggacatcttcatctc |
907 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
23224964 |
accttaccctccaagtccactagcaataccaataattggtcatcttcatctc |
23224913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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