View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11727_low_3 (Length: 589)
Name: NF11727_low_3
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 450; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 20 - 579
Target Start/End: Complemental strand, 33176578 - 33176022
Alignment:
| Q |
20 |
agatggttgtctatgtgtaagtactcttttttatattaatttaaacttgatatttatccttctaattaaactcgcaaaatgcctaaccaagttggttgtt |
119 |
Q |
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| T |
33176578 |
agatggttgtctatgtataagtactcttttttatattaatttaaacttgatatttatccttctaattaaactcgcaaaatgcctaaccaagttggttgtt |
33176479 |
T |
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| Q |
120 |
ctcctcttaaaatgaaaagtttgtgcagccatgaatcatgattcacggggtttcattacagttttttctctattaaatgaaatagaatttttgtgtaata |
219 |
Q |
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| T |
33176478 |
ctcctcttaaaatgaaaagtttgtgcagccatgaatcatgattcatggggtttcattacagttttttctctattaaatgaaatagaatttttgtgtaata |
33176379 |
T |
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| Q |
220 |
agtaaataaagaacaattatttttataggaatgtaagaacaacatagatatatgtcnnnnnnnnnnnnnnnnnnnaaattatgatatatgccaatatttg |
319 |
Q |
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| T |
33176378 |
agtaaataaagaacaattatttttataggaatgtaagaacaacatagatatacgtcttttttttttttttttt---aattatgatatatgccaatatttg |
33176282 |
T |
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| Q |
320 |
tttagattctttcataagtttgttttgaatatgaaattctaattaattggaagcattgtttgtgcatccacaaatagttcattacacatttaatgtatag |
419 |
Q |
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| T |
33176281 |
tttagattctttcataagtttgttttgaatatgaaattctaattaattggaagcattgtttgtgcatccacaaatagttcattacacatttattgtatag |
33176182 |
T |
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| Q |
420 |
tgatctagnnnnnnntattacattgatttgcatcaaataaattaaacatgtgaacttacgttcattagcatctatcaaatgaagtcattcatggcacatt |
519 |
Q |
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| T |
33176181 |
tgatctagaaaaaaatattacattgagttgcatcaaataaattaaacatgtgaacttacgttcattagcatctatcaaatgaagtcattcatggcacatt |
33176082 |
T |
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| Q |
520 |
gaagtggctaagattccaacaaattcatgtcacatgtacaatatactgcacttacctttg |
579 |
Q |
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| T |
33176081 |
gaagtggctaagattccaacaaattcatgtcacatgtacaatatactacacttacctttg |
33176022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 321 - 393
Target Start/End: Complemental strand, 33170891 - 33170819
Alignment:
| Q |
321 |
ttagattctttcataagtttgttttgaatatgaaattctaattaattggaagcattgtttgtgcatccacaaa |
393 |
Q |
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| T |
33170891 |
ttagattctttcataaatttgttttggatatgcaattctaattaattgagagtattgtatgttcattcacaaa |
33170819 |
T |
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