View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11727_low_4 (Length: 487)
Name: NF11727_low_4
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 172; Significance: 3e-92; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 278 - 474
Target Start/End: Complemental strand, 5688133 - 5687933
Alignment:
| Q |
278 |
aaagtagatgcgacaatgattaaaatattgaaagtattactatatacactgtttgtaacacaggaaactttaattcatcaaaaagaaatatacagaacta |
377 |
Q |
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| T |
5688133 |
aaagtagatgcgacaatgattaaaatattgaaagtattactatatacactgtttgtaacgcagtaaactttaattcatcaaaaagaaatatacagaacta |
5688034 |
T |
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| Q |
378 |
tag----ttgttttagtcatagaggtaggcatcattaaccaaactgcatgagccaaaattgtgtcgcattatcttgtgattttcgtttcttttcttcttc |
473 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5688033 |
tagttaattgttttagtcatagaggtaggcatcattaaccaaactgcatgagcaaaaattgtgtcgcattatcttgtgattttcgtttcttttcttcttc |
5687934 |
T |
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| Q |
474 |
t |
474 |
Q |
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| T |
5687933 |
t |
5687933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 18 - 177
Target Start/End: Complemental strand, 5688314 - 5688155
Alignment:
| Q |
18 |
gtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagc |
117 |
Q |
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| T |
5688314 |
gtttatgggttacattattgtaaaataatggatgaaaaagttttgagcactcatcagctgtgcacataaaaaggaatgacaaaagttttctaaaataagc |
5688215 |
T |
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| Q |
118 |
acaacatttctaatcaaggctgctcctcaaatctgttttgcatattaatatccccataaa |
177 |
Q |
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| T |
5688214 |
acaacatttctaatcaaggctgctcctcaaacctgttttgcatattaatatccccataaa |
5688155 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5178685 - 5178768
Alignment:
| Q |
18 |
gtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
101 |
Q |
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| T |
5178685 |
gtttgtgggttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5178768 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 18 - 101
Target Start/End: Original strand, 5280500 - 5280583
Alignment:
| Q |
18 |
gtttatgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaa |
101 |
Q |
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| T |
5280500 |
gtttgtggtttacattattgtaaaatcatggatgaaaaagttttgagcattcattagcagtgcacataaaaaggcatgacaaaa |
5280583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 91
Target Start/End: Complemental strand, 5125873 - 5125807
Alignment:
| Q |
25 |
ggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaagg |
91 |
Q |
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| T |
5125873 |
ggttacatcattgtaaaatcatggatgaaaaagttttgaacactcattaccagtgcccataaaaagg |
5125807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 188 - 306
Target Start/End: Complemental strand, 5125721 - 5125603
Alignment:
| Q |
188 |
aaaatcttgtgcaattaatagcaaaagtgtcggcagaagttacaaacataactatctc-aggaaatattaatagctctttgaataaagtaga-aagtaga |
285 |
Q |
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| T |
5125721 |
aaaatcttgtgcaagtatcagtaaaagtgt-ggcagaagttactaacatatctatctcaaggaaatatgaattgctcctagagtaaagtagactagtaga |
5125623 |
T |
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| Q |
286 |
tgcgacaatgattaaaatatt |
306 |
Q |
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| T |
5125622 |
tgtgacaatga-taaaatatt |
5125603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 5280592 - 5280676
Alignment:
| Q |
220 |
gcagaagttacaaacataactatctca-ggaaatattaatagctcttt-gaataaagtaga-----aagtagatgcgacaatgat |
297 |
Q |
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| T |
5280592 |
gcagaagttactaacatatctatctcaaggaaatattaatagctcttttgaataaagtatactagtaagtagatgcgacaatgat |
5280676 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 220 - 297
Target Start/End: Original strand, 5178777 - 5178862
Alignment:
| Q |
220 |
gcagaagttacaaacataactatctca-ggaaat-attaatagctcttt-gaataaagtaga-----aagtagatgcgacaatgat |
297 |
Q |
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| T |
5178777 |
gcagaagttactaacatatctatctcaaggaaattattaatagctcttttgaataaagtatactagtaagtagatgcgacaatgat |
5178862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 23 - 123
Target Start/End: Original strand, 22054073 - 22054171
Alignment:
| Q |
23 |
tgggttacattattgtaaaataatggatgaaaaagttttgagcattcattagcggtgcacataaaaaggaatgacaaaagttttctaaaataagcacaac |
122 |
Q |
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||||||||||||||||||||| |||||||| |||||||||| ||||||||||| || ||||| ||||| ||| ||||||||||||||| ||||||||| |
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| T |
22054073 |
tgggttacattattgtaaaatcatggatgataaagttttgaacattcattagcagt--acatataaaggcatggtaaaagttttctaaaacaagcacaac |
22054170 |
T |
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