View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11727_low_6 (Length: 425)
Name: NF11727_low_6
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 56231539 - 56231133
Alignment:
| Q |
9 |
aatgaggggataaagcttgttttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaactt |
108 |
Q |
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| T |
56231539 |
aatgaggggataaagcttgttttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaaaactt |
56231440 |
T |
|
| Q |
109 |
gac---ttggttaattaatggtatgtcacaagaagaa---aaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatct |
202 |
Q |
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||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56231439 |
gacgacttggttaattaatggtatgtcaaaagaagaagaaaaattggataataccctaaagtgttgtccattatggagttgaacactagcatcaaaatct |
56231340 |
T |
|
| Q |
203 |
ctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtga |
302 |
Q |
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| T |
56231339 |
ctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaacacaacacagtga |
56231240 |
T |
|
| Q |
303 |
tgccttccttaactgcgtgaaatgcagcgattgaaaggccatcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaacatcaactccatc |
402 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
56231239 |
tgccttccttaactgcgtgaaatgcagcgattgaaaggccatcatcaaagtaatcagaagcatcaccaccaagagaaagggaaagaacatcaactccatc |
56231140 |
T |
|
| Q |
403 |
atgaata |
409 |
Q |
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| T |
56231139 |
atgaata |
56231133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 219; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 39189276 - 39188859
Alignment:
| Q |
9 |
aatgaggggataaagcttgttttctggcaaagctatagaaaggctatctccctgataatcaatcagtaatggaaatattagagaagaaaatggaa----- |
103 |
Q |
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|||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
39189276 |
aatgagtggataaagcttgttttctggcaaagctgtagaaaggctagctccctgataatcaatcgataatggaaatattagagaagaaaatggaagtgat |
39189177 |
T |
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| Q |
104 |
----aacttga----cttgg-ttaattaatggtatgtcacaaga---agaaaaattggataataccctaaagtgttgtccattatggagttgaacactag |
191 |
Q |
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|| ||| |||| || |||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
39189176 |
agaaaaaatgaaaaacttgactttattaatggtatgtcacaagatgaagaaaaattggataataccttaaagtgttgtccattatggagttgaacaacag |
39189077 |
T |
|
| Q |
192 |
catcaaaatctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcctgaatttccagctgaaca |
291 |
Q |
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| T |
39189076 |
tatcaaactctctatctaaggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaaatgttggtccagaatttccagctgaaca |
39188977 |
T |
|
| Q |
292 |
caacacagtgatgccttccttaactgcgtgaaatgcagcgattgaaaggccatcatcaaagtaatcagaagcatcacctccaagagaaagggaaagaaca |
391 |
Q |
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| T |
39188976 |
caacacagtgatgcctttcttaacagcatgaaatgcagcaattgaaagagcatcatcaaagtaatcaacagcaggacttccaagagatatggaaagaaca |
39188877 |
T |
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| Q |
392 |
tcaactccatcatgaata |
409 |
Q |
| |
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||||| |||||||||||| |
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| T |
39188876 |
tcaaccccatcatgaata |
39188859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 273
Target Start/End: Original strand, 31050907 - 31050980
Alignment:
| Q |
200 |
tctctatctatggtacttgcagcaacagttaatatccaaggtgcaacatttgaaacagttccaggtgttggtcc |
273 |
Q |
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|||||||| || ||||| ||||||||||| || | |||||| |||||||| | |||| ||||||| |||||||| |
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| T |
31050907 |
tctctatcaattgtactagcagcaacagtgaacacccaaggagcaacattagtaacacttccaggggttggtcc |
31050980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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