View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11727_low_9 (Length: 301)
Name: NF11727_low_9
Description: NF11727
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11727_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 1 - 286
Target Start/End: Complemental strand, 21489963 - 21489678
Alignment:
| Q |
1 |
tgtgagtagttatggttgagaaggaactcatgtggttatttgatgattattagccaatgttgtatgttgtgtaattgaactaaagtggactaaatggtat |
100 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489963 |
tgtgagtatatatggttgagaaggaactcatgtggttatttgatgattattagccaatgttgtatgttgtgtaattgaactaaagtggactaaatggtat |
21489864 |
T |
|
| Q |
101 |
gttgttggttgactttttgatttgtaataagatattcatatttaaattatctatgaattaaattatatcttaaatattgtgtattgtgttgagagtcaca |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21489863 |
gttgttcgttgactttttgatttgtaataagatattcatatttaaattatctatgaattaaattatatcttaaatattgtgtattgtgttgagagtcaca |
21489764 |
T |
|
| Q |
201 |
tatacaacattgcaaaaaatattcatttcgcttgttcattgcacgggtcaaagactattccttcgacatttgtccgttccaattgt |
286 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
21489763 |
tatacaacattacaaaaaatattcatttcgcttgttcgttgcacgggtcaaagactattccttcaacatttgtccgttccaattgt |
21489678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 121 - 232
Target Start/End: Original strand, 44197550 - 44197662
Alignment:
| Q |
121 |
tttgtaataagatattcatatttaaattatctatgaattaaattatatcttaaatattgtgtattgtgttgagagtc-acatatacaacattgcaaaaaa |
219 |
Q |
| |
|
||||||| || ||| ||||||||||||||| |||||||| |||||||||||| | || |||||||||||||||||| |||| | ||||||| ||||||| |
|
|
| T |
44197550 |
tttgtaacaaaatactcatatttaaattatgcatgaattatattatatcttaagttttttgtattgtgttgagagtcaacatcttcaacattacaaaaaa |
44197649 |
T |
|
| Q |
220 |
tattcatttcgct |
232 |
Q |
| |
|
|| |||||||||| |
|
|
| T |
44197650 |
tactcatttcgct |
44197662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 64 - 168
Target Start/End: Original strand, 3975810 - 3975911
Alignment:
| Q |
64 |
atgttgtgtaattgaactaaagtggactaaatggtatgttgttggttgactttttgatttgtaataagatattcatatttaaattatctatgaattaaat |
163 |
Q |
| |
|
|||||||||||| |||||||||| ||| || | |||||| |||||||||| ||||||||||||| |||||| || ||||||||||||||| |||| || |
|
|
| T |
3975810 |
atgttgtgtaatggaactaaagtagaccaa-tagtatgtcgttggttgacattttgatttgtaacaagatactc--atttaaattatctatacattacat |
3975906 |
T |
|
| Q |
164 |
tatat |
168 |
Q |
| |
|
||||| |
|
|
| T |
3975907 |
tatat |
3975911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 64 - 173
Target Start/End: Original strand, 48867469 - 48867578
Alignment:
| Q |
64 |
atgttgtgtaattgaactaaagtggactaaatggtatgttgttggttgactttttgatttgtaataagatattcatatttaaattatctatgaattaaat |
163 |
Q |
| |
|
|||||||||||| |||||||||| || |||| | ||| ||| | | ||||||||| ||||| || ||||| ||||||||||||||||||||||||| || |
|
|
| T |
48867469 |
atgttgtgtaatggaactaaagtcgagtaaaagttatattggtcgatgacttttttatttgaaaggagataatcatatttaaattatctatgaattacat |
48867568 |
T |
|
| Q |
164 |
tatatcttaa |
173 |
Q |
| |
|
||||| |||| |
|
|
| T |
48867569 |
tatattttaa |
48867578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 184
Target Start/End: Original strand, 4535069 - 4535188
Alignment:
| Q |
64 |
atgttgtgtaattgaactaaagtggactaaatggtatgttgttggttgactttttgatttgtaataagatattcatatttaaattatctatgaattaaat |
163 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||||||| ||||| || || ||||| || |||||| ||||||||||||||| ||||||||| || |
|
|
| T |
4535069 |
atgttgtgtaatggaactaaagttgattaaatggtatgt-gttggacgatgactttatttggaagaagataatcatatttaaattatatatgaattacat |
4535167 |
T |
|
| Q |
164 |
tatatcttaaatattgtgtat |
184 |
Q |
| |
|
|||||||||||||| ||||| |
|
|
| T |
4535168 |
catatcttaaatattttgtat |
4535188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 35646965 - 35646924
Alignment:
| Q |
203 |
tacaacattgcaaaaaatattcatttcgcttgttcattgcac |
244 |
Q |
| |
|
||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
35646965 |
tacaacattacaaaaaatattcatctcgcttgttcattgcac |
35646924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University