View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_high_13 (Length: 214)
Name: NF11728_high_13
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_high_13 |
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Alignment Details
Target: chr5 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 18 - 203
Target Start/End: Complemental strand, 23168247 - 23168062
Alignment:
| Q |
18 |
caatgtctttctaaactgcgatgtctttatgccttcctttgctcatttcacgacaagaacacgtgggccatcttggtacagcatagaattccctacgaaa |
117 |
Q |
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| T |
23168247 |
caatgtctttctaaactgcgatgtctttatgctttcctttgctcctttcacgacaagaacatgtgggccatcttggtacatcatagaattccctgcgaaa |
23168148 |
T |
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| Q |
118 |
gatgctagattcgaagacgagacaaacaccatctggaaagcttacttgactcccaggtttcttcctagcaggactactccctatgc |
203 |
Q |
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| T |
23168147 |
gatgctagattcgaagacgagacaaacaccatctggaaagcttacttgactcccaggtttcttcctagcaggactactcccaatgc |
23168062 |
T |
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Target: chr3 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 205
Target Start/End: Original strand, 14658671 - 14658857
Alignment:
| Q |
18 |
caatgtctttctaaactgcgatgtctttatgccttcctttgctcatttcacgacaagaacacgtgggccatcttggtacagcatagaattccctacgaaa |
117 |
Q |
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| T |
14658671 |
caatgtctttctaaactgtgatgtcttaatgccttcctttgcttctttcacgtcaagaacatgtgggccatcttggtacatcagagaattccctgtgaaa |
14658770 |
T |
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| Q |
118 |
gatgctagattcgaagacgagacaaacaccatctggaaagcttacttgactcccaggtttcttcctagcaggactactccctatgctt |
205 |
Q |
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| T |
14658771 |
gatgctagattcgaagacgagacaaacaccatctagaaagcttacttgact-ccaggttgctttctagcaggactactcccaatgctt |
14658857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 25110210 - 25110306
Alignment:
| Q |
102 |
agaattccctacgaaagatgctagattcgaagacgagacaaacaccatctggaaagcttacttgactcccaggtttcttcctagcaggactactccc |
198 |
Q |
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| T |
25110210 |
agaattccctgcgaaagatgtcagattcgaagatgaggcaaacggcatctgaaaagcttacttgactccgaagtttctttttagcaggactactccc |
25110306 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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