View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_high_3 (Length: 457)
Name: NF11728_high_3
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_high_3 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 19 - 447
Target Start/End: Original strand, 4265543 - 4265971
Alignment:
| Q |
19 |
acttttcctcaacacccttcttccaaaactcaaaaaatcactttccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgat |
118 |
Q |
| |
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||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| |
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| T |
4265543 |
acttttctacaacacccttcttcccaaactcaaaaaatcactttccattgcactttcttacttttatcctcttttgggtcatctcacttggcctaatgat |
4265642 |
T |
|
| Q |
119 |
tctcacaagccaatcatcaaattcattaagggaaacactctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatctta |
218 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4265643 |
tctcacaagccaatcatcaaattcatcaagggaaaccctctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatctta |
4265742 |
T |
|
| Q |
219 |
ctaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatgg |
318 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4265743 |
ctgaagctaaacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctattttggctcttcaagttactctttttccaaactatgg |
4265842 |
T |
|
| Q |
319 |
attttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
4265843 |
attttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaat |
4265942 |
T |
|
| Q |
419 |
gaagtatctgaattagtatcacccctttg |
447 |
Q |
| |
|
|||||||||||||||| || ||||||||| |
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|
| T |
4265943 |
gaagtatctgaattagaattacccctttg |
4265971 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 21 - 447
Target Start/End: Original strand, 4259999 - 4260425
Alignment:
| Q |
21 |
ttttcctcaacacccttcttccaaaactcaaaaaatcactttccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgattc |
120 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4259999 |
ttttcttcaaaacccttcttcccaaactcaaaaaatcactttccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgattc |
4260098 |
T |
|
| Q |
121 |
tcacaagccaatcatcaaattcattaagggaaacactctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatcttact |
220 |
Q |
| |
|
||||||||||||||| |||||||| || ||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||| || |
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|
| T |
4260099 |
tcacaagccaatcattaaattcatcaaaggaaacactctttcacttaccgtagctgaatctcatgctgatttcaatcatttctctggtaagaatctttct |
4260198 |
T |
|
| Q |
221 |
aaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatggat |
320 |
Q |
| |
|
|||||| ||| ||||||||| |||||||||||||||||||||| ||||| ||||||||| |||||||||||||||||||| |||||||||||||||||| |
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|
| T |
4260199 |
gaagctacacagattcatgattttttacctaacttgaatatttctcatgatcaagcttcttttttggctcttcaagttactttttttccaaactatggat |
4260298 |
T |
|
| Q |
321 |
tttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaatga |
420 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||| |
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|
| T |
4260299 |
tttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaattga |
4260398 |
T |
|
| Q |
421 |
agtatctgaattagtatcacccctttg |
447 |
Q |
| |
|
||||||||||||||||| ||||||||| |
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|
| T |
4260399 |
agtatctgaattagtattacccctttg |
4260425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 19 - 447
Target Start/End: Complemental strand, 4290180 - 4289752
Alignment:
| Q |
19 |
acttttcctcaacacccttcttccaaaactcaaaaaatcactttccattgcactttctcacttttatcctcttttgggtcatctcatttggcctcatgat |
118 |
Q |
| |
|
||||||| | || ||||||||||| ||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
4290180 |
acttttcttaaatacccttcttcccaaactcaaacaatctctttctcttacactttctcacttttatcctcttttgggtcatctcatttggcctaatgat |
4290081 |
T |
|
| Q |
119 |
tctcacaagccaatcatcaaattcattaagggaaacactctttcacttaccatagctgaatctgatgctgatttcaatcatctttcaggtaagaatctta |
218 |
Q |
| |
|
|||||||| |||||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |||||||||||| |
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|
| T |
4290080 |
tctcacaaaccaatcattaaattcataagaggaaacactctttcacttaccatagctgaatctcatgctgatttcaatcatttatctggtaagaatcttt |
4289981 |
T |
|
| Q |
219 |
ctaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagcttctattttggctcttcaagttactgtttttccaaactatgg |
318 |
Q |
| |
|
|| |||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||||||||||| |||||||||||||||| |
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|
| T |
4289980 |
ctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagcttctgttttggctcttcaagttaccatttttccaaactatgg |
4289881 |
T |
|
| Q |
319 |
attttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaagcttgggcttacctatgtagaaagcttgaaaat |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4289880 |
attttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttcttttatcaaatcttgggcttacctatgtagaaagcttgaaaat |
4289781 |
T |
|
| Q |
419 |
gaagtatctgaattagtatcacccctttg |
447 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
4289780 |
gaagtatctgaattagtatcacccctttg |
4289752 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 78 - 431
Target Start/End: Complemental strand, 4298705 - 4298352
Alignment:
| Q |
78 |
acttttatcctcttttgggtcatctcatttggcctcatgattctcacaagccaatcatcaaattcattaagggaaacactctttcacttaccatagctga |
177 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||||||| | ||| |||||||||||||||||||||||||||| |
|
|
| T |
4298705 |
acttttatcctcttttgggtcatctcacttggcctaatgattctcacaaaccaatcatcaaattcttcaagagaaacactctttcacttaccatagctga |
4298606 |
T |
|
| Q |
178 |
atctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaagct |
277 |
Q |
| |
|
||||||| ||||||||||| |||| || |||||||||| | || |||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
4298605 |
atctgattctgatttcaattatctatctggtaagaatccttctgaagctacacaaattcatgatcttttacctaacttgaatatttctcatgatcaagct |
4298506 |
T |
|
| Q |
278 |
tctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttctt |
377 |
Q |
| |
|
| | ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4298505 |
tatgttttggctcttcaagttaccgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatggtaaaacttcaacttctt |
4298406 |
T |
|
| Q |
378 |
ttatcaaagcttgggcttacctatgtagaaagcttgaaaatgaagtatctgaat |
431 |
Q |
| |
|
|||||||| |||||||||||||||||||||| ||| ||| ||| ||||||||| |
|
|
| T |
4298405 |
ttatcaaatcttgggcttacctatgtagaaatattggaaaggaaatatctgaat |
4298352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 176 - 360
Target Start/End: Complemental strand, 4285293 - 4285109
Alignment:
| Q |
176 |
gaatctgatgctgatttcaatcatctttcaggtaagaatcttactaaagctaaacaaattcatgatcttttacctaacttgaatatttcacatgaccaag |
275 |
Q |
| |
|
|||||| |||||| |||||||||| | || | |||||||||| | |||| | |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4285293 |
gaatctcatgctgctttcaatcatttatctgctaagaatctttcagaagccacacaaattcatgatcttttacctaacttgaatatttcacatgatcaag |
4285194 |
T |
|
| Q |
276 |
cttctattttggctcttcaagttactgtttttccaaactatggattttcaattggtattacttcacatcatgctgttttagatgg |
360 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| |
|
|
| T |
4285193 |
ctactgttttggctcttcaagttactgtttttccaaactatggattttcaatgggcattacttcacatcatgctgttttagatgg |
4285109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 19 - 73
Target Start/End: Complemental strand, 4300229 - 4300175
Alignment:
| Q |
19 |
acttttcctcaacacccttcttccaaaactcaaaaaatcactttccattgcactt |
73 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4300229 |
acttttcctcaacacccttcttcccaaactcaaaaaatcactttccattgcactt |
4300175 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 389 - 446
Target Start/End: Complemental strand, 4285111 - 4285054
Alignment:
| Q |
389 |
tgggcttacctatgtagaaagcttgaaaatgaagtatctgaattagtatcaccccttt |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |
|
|
| T |
4285111 |
tgggcttacctatgtagaaagcttgaaaatgaagtttctgaattagaatcaccccttt |
4285054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 99
Target Start/End: Complemental strand, 4258464 - 4258385
Alignment:
| Q |
19 |
acttttcctcaacacccttcttccaaaactcaaaaaatcactttccattgcactttctcacttttatcctcttttgggtca |
99 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||| |||| ||||| || |||||||||||| ||| | |||||||||||| |
|
|
| T |
4258464 |
acttttcttcaatacccttcttcccaaactcaatcaatccctttctcttacactttctcactctta-catcttttgggtca |
4258385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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