View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_high_6 (Length: 342)
Name: NF11728_high_6
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 328; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 1 - 332
Target Start/End: Original strand, 43817249 - 43817580
Alignment:
| Q |
1 |
ccatccacagaaaatttatgttccccggcacccttggtcactttcaaaatcaccgtctcaacatgtttcgcatccaccgtctctcccttttccgtggacc |
100 |
Q |
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| T |
43817249 |
ccatccacagaaaatttatgttccccggcacccttggtcactttcaaaatcaccgtctcaacatgtttcgcatccaccgtctctcccttttccgtggacc |
43817348 |
T |
|
| Q |
101 |
cacatattttcgtatcacgcgataaatctacactctcatcaaagaaagtgtagttatcataacgaagaaaacaaccgtcgaggtaaattctacctgaaac |
200 |
Q |
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| T |
43817349 |
cacatattttcgtatcacgcgataaatctacactctcatcaaagaaagtgtagttatcataacgaagaaaacaaccgtcgaggtaaattctacctgaaac |
43817448 |
T |
|
| Q |
201 |
ctttggtatgcacctcgataacaattgtcttgcttgggtgaaacaaatgttgcattgtgtcggatcaagatcgcgttgacattggcctaatgcatacatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43817449 |
ctttggtatgcacctcgataacaattgtcttgcttgggtgaaacaaatgttgcattgtgtcggatcaagatcgcgttgacattggcctaatgcatacatt |
43817548 |
T |
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| Q |
301 |
ggatgccaattaccaactaatgtctgtgctcc |
332 |
Q |
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||||||||||||||||||||||| |||||||| |
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| T |
43817549 |
ggatgccaattaccaactaatgtttgtgctcc |
43817580 |
T |
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