View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_low_1 (Length: 546)
Name: NF11728_low_1
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_low_1 |
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| [»] scaffold0155 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 17 - 536
Target Start/End: Complemental strand, 42394398 - 42393879
Alignment:
| Q |
17 |
aagtttgtgtggtgaagatgcttagcaataaaagtcttgattcagtctatgaactccgccgtggtgaggttcggaaaatggtagagtatattcacaactg |
116 |
Q |
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| T |
42394398 |
aagtttgtgtggtgaagatgcttagcaataaaagtcttgattcagtctacgaactccgccgtggtgaggttcggaaaatggtagagtatattcacaactg |
42394299 |
T |
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| Q |
117 |
tgccggatcaacggtgagtgttggggagcaagtgtttttgacggtgttaaacgtgattactaatatgatgtggggtgcggcgatggaggacggagagagg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
42394298 |
tgccggatcaacggtgagtgttggggagcaagtgtttttgacggtgttgaacgtgattactaatatgatgtggggtgcggcgatggaggacggtgagagg |
42394199 |
T |
|
| Q |
217 |
gagagcttaggagcggagtttaggaagacagcagcggagatggtgcagctcatagggaagccgaacttgtcggannnnnnnccttcgttggctcggtttg |
316 |
Q |
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| T |
42394198 |
gagagcttaggagcggaatttaggaagacagcagcagagatggtgcagctcatagggaagccgaacttgtcagatttttttcctgcgctggctcggtttg |
42394099 |
T |
|
| Q |
317 |
atttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaagg |
416 |
Q |
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| T |
42394098 |
atttgcagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacgaatggtgaaggatgtagaagg |
42393999 |
T |
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| Q |
417 |
aaaggaaagtgaaagtaaggannnnnnnnnnnnnnngttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctctt |
516 |
Q |
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| T |
42393998 |
aaaggagagtgaaagtaaggattttttgcagtttttgttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctctt |
42393899 |
T |
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| Q |
517 |
ctcctggtatgctacctttg |
536 |
Q |
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| T |
42393898 |
ctcctggtatgctacctttg |
42393879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 22 - 396
Target Start/End: Complemental strand, 42378478 - 42378104
Alignment:
| Q |
22 |
tgtgtggtgaagatgcttagcaataaaagtcttgattcagtctatgaactccgccgtggtgaggttcggaaaatggtagagtatattcacaactgtgccg |
121 |
Q |
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| T |
42378478 |
tgtgtcgtgaagatgcttagtaacacaactcttgactccgtttacgagctccgacgaggtgaggttcggaaaacggtcgggtatattcatgatcgggtag |
42378379 |
T |
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| Q |
122 |
gatcaacggtgagtgttggggagcaagtgtttttgacggtgttaaacgtgattactaatatgatgtggggtgcggcgatggaggacggagagagggagag |
221 |
Q |
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| T |
42378378 |
ggtcaacggtgaatgttggtgagcaggtttttttaacggtgttgaatgtgattacgaatatgatgtggggtgcgggggtggaaggagaagagagggagag |
42378279 |
T |
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| Q |
222 |
cttaggagcggagtttaggaagacagcagcggagatggtgcagctcatagggaagccgaacttgtcggannnnnnnccttcgttggctcggtttgatttg |
321 |
Q |
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| T |
42378278 |
tttaggggcggagtttagggaggcggtggcggagatggtgcagctattggggaagccgaatttgtcggatttttttcctgggttggcccggtttgatttg |
42378179 |
T |
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| Q |
322 |
cagggtattgtgaaagatatgaatcttttggtgcctcgttttgatggaatatttgaaaagatgattggtgaacga |
396 |
Q |
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| T |
42378178 |
cagggtgttgtgaaagatatgaatgctttggtgcctcgctttgatgggatatttgagaagatgattggtgaacga |
42378104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 453 - 536
Target Start/End: Complemental strand, 42378044 - 42377961
Alignment:
| Q |
453 |
gttgaatttgaaggaggaaggtgattccaagacaccattcacaagcacccacgtgaaggctcttctcctggtatgctacctttg |
536 |
Q |
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| T |
42378044 |
gttgaatttgaaggaggagggtgattctaagacaccgtttacaaatactcatgttaaggctctactcatggtatgctacttttg |
42377961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0155 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0155
Description:
Target: scaffold0155; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 17 - 81
Target Start/End: Complemental strand, 288 - 224
Alignment:
| Q |
17 |
aagtttgtgtggtgaagatgcttagcaataaaagtcttgattcagtctatgaactccgccgtggt |
81 |
Q |
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| T |
288 |
aagtttgtgtggtgaagatgcttagcaataaaagtcttgattcagtgtatgaactccgccgtggt |
224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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