View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11728_low_10 (Length: 250)
Name: NF11728_low_10
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_low_10 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 15290219 - 15290121
Alignment:
| Q |
1 |
taatatatgcacgaatgcaaactattttttatctttcaaaaattaaatctttacttaagtcaattcaatcaaatacagttatacatatttgtacaattg |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290219 |
taatatatgcacgaatgcaaactattttttatctttcaaaaattaaatctttacttaagtcaattcaatcaaatacagttatacatatttgtacaattg |
15290121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 15446792 - 15446869
Alignment:
| Q |
5 |
atatgcacgaatgcaaac--tattttttatctttcaaaaattaaatctttacttaagtcaattcaatcaaatacagtt |
80 |
Q |
| |
|
|||||||| ||||||||| | ||||||||||||||| |||||||| |||||| |||||||||||||||||| ||||| |
|
|
| T |
15446792 |
atatgcacaaatgcaaacatttttttttatctttcaataattaaatttttactgaagtcaattcaatcaaatgcagtt |
15446869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 206 - 240
Target Start/End: Complemental strand, 15290014 - 15289980
Alignment:
| Q |
206 |
tacattaaggatttagcgttgattgcatacctttg |
240 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
15290014 |
tacattaaggatttagcgttgattgcatacctttg |
15289980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 15293344 - 15293268
Alignment:
| Q |
5 |
atatgcacgaatgcaaactattttttatctttcaaaaattaaatctttacttaagtcaattcaatcaaatacagttat |
82 |
Q |
| |
|
|||||||| ||||||||||||||| |||||| || |||| ||||||||| || ||||||||||||| || ||||||| |
|
|
| T |
15293344 |
atatgcacatatgcaaactattttt-atcttttaataattgaatctttacatacgtcaattcaatcagatgcagttat |
15293268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University