View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_low_11 (Length: 240)
Name: NF11728_low_11
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_low_11 |
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Alignment Details
Target: chr6 (Bit Score: 183; Significance: 4e-99; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 15290217 - 15290438
Alignment:
| Q |
1 |
ttaaataaatcctatgataaagatagtctatgttatctatatgcttaaaatttcactattactttttcaatattttgatataacttaatatgttttgtct |
100 |
Q |
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| T |
15290217 |
ttaaataaatcctatgataaa-atagtttatgttatctatatctttaaaatttcactaatactttttcaatattttaaaataactttatatgttttgtct |
15290315 |
T |
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| Q |
101 |
tatatagggaaggaagtggaagaatttgaatggatagtaaatttagacaagtatgaaagggcgaagattgtattccataacatgagaggttgtgtccaag |
200 |
Q |
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| T |
15290316 |
tatgtagggaaggaagtggaagaatttgaatggatagtaaatttagacaagtatgaaagggcgaagattgtattccataacatgagaggttgtgtccaag |
15290415 |
T |
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| Q |
201 |
acttgagtgtgtgtgacttttca |
223 |
Q |
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| T |
15290416 |
acttgagtgtgtgtgacttttca |
15290438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 35 - 223
Target Start/End: Original strand, 15293987 - 15294172
Alignment:
| Q |
35 |
atctatatgcttaaaatttcactattacttttt-caatattttgatataacttaatatgttttgtcttatatagggaaggaagtggaagaatttgaatgg |
133 |
Q |
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| T |
15293987 |
atctatatgttgaaaatttcatgaatacttttttcaatattttgtaataacttaatatggtttttcttatgtagggaat----tggaagaatataagtgg |
15294082 |
T |
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| Q |
134 |
atagtaaatttagacaagtatgaaagggcgaagattgtattccataacatgagaggttgtgtccaagacttgagtgtgtgtgacttttca |
223 |
Q |
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| T |
15294083 |
ataataaatttagacaagtatgaaagggtgaaaattgtattccaaaacacgagagactatttccaagacttgagtctgtgtgacttttca |
15294172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 15446792 - 15446617
Alignment:
| Q |
1 |
ttaaataaatcctatgataaagatagtctatgttatctatatgcttaaaatttcactattactttttcaatattttgatataacttaatatgttttgtct |
100 |
Q |
| |
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||||||||| | ||||||||||| | ||||| ||||||| || | ||||||||| ||||| ||||| | |||| | |||||||||||| |||| || |
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| T |
15446792 |
ttaaataaaacatatgataaagacactctat--tatctatttgttaaaaatttcattattatttttttattattaaaaaataacttaatatatttttgct |
15446695 |
T |
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| Q |
101 |
tatatagggaaggaagtggaagaatttgaatggatagtaaatttagacaagtatgaaagggcgaagattgtattccataaca |
182 |
Q |
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||| |||||||| |||||||||||||||||| ||||||| | ||||||||||||| || ||||||| ||| |||| |
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| T |
15446694 |
tatgtagggaag----tggaagaatttgaatggaggacaaatttaaaaaagtatgaaagggtaaacattgtataccaaaaca |
15446617 |
T |
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