View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_low_14 (Length: 209)
Name: NF11728_low_14
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 40944699 - 40944873
Alignment:
| Q |
19 |
acaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40944699 |
acaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactct |
40944798 |
T |
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| Q |
119 |
gtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaattttcaaggaactcctatt |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
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| T |
40944799 |
gtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaactttcaaggaacgcctatt |
40944873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 40958664 - 40958838
Alignment:
| Q |
19 |
acaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40958664 |
acaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactct |
40958763 |
T |
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| Q |
119 |
gtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaattttcaaggaactcctatt |
193 |
Q |
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| T |
40958764 |
gtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaaatttcaaggaacgcctatt |
40958838 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 19 - 192
Target Start/End: Complemental strand, 28184720 - 28184547
Alignment:
| Q |
19 |
acaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactct |
118 |
Q |
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||||||| | ||||| |||||||||||||| |||||||||||||||||| |||||||||| ||||| || |||||||| ||||| |||||||| ||||| |
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| T |
28184720 |
acaagatcgttatgcacttagaacttcacctcaatggcttggtcctttgattgaagtgataagattttcgaccaagtctattgaaagagagattaactcg |
28184621 |
T |
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| Q |
119 |
gtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaattttcaaggaactcctat |
192 |
Q |
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|||||||||||||| ||||| ||||||||||| ||||| || | |||||||| || ||||||||||| ||||| |
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| T |
28184620 |
gtcaacgacaaccctttgatcgatgtttcaaggaacaaggccatacatggtggtaactttcaaggaacacctat |
28184547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 3e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 40549416 - 40549580
Alignment:
| Q |
19 |
acaagatagatatgcgcttagaacttcaccacaatggcttggtcctttggttgaagtgattagattctctaccaagtcaattgagagagagatcaactct |
118 |
Q |
| |
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||||||||||||||| ||||| |||||||| |||||| | ||||| ||||||| ||||| | || || || ||||||||||||||||| || ||| |
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| T |
40549416 |
acaagatagatatgcacttaggacttcaccgcaatggttaggtccacaaattgaagttattaggtattcaacaaaatcaattgagagagagattaattct |
40549515 |
T |
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| Q |
119 |
gtcaacgacaaccccttgattgatgtttcaagaaacaaagctttgcatggtggaaattttcaagg |
183 |
Q |
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|| || || || || ||||||||||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
40549516 |
gtgaatgataatcctttgattgatgtgaaaaggaacaaagctttgcatggtggaaactttcaagg |
40549580 |
T |
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