View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_low_2 (Length: 495)
Name: NF11728_low_2
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 322; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 19 - 484
Target Start/End: Original strand, 31126581 - 31127046
Alignment:
| Q |
19 |
ccgccaacttccaccgccgcatacaatggatatctgatatcctccaaaccgtcccttcctccaccttcatcctccaccgcgccttcggttcccgccaagt |
118 |
Q |
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|||||||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
31126581 |
ccgccaacttccaccgccgcatacaatggatagctgatattctccaaaccatcccttcctccaccttcatcttccaccgcgccttcggttcccgtcaagt |
31126680 |
T |
|
| Q |
119 |
cttcacggcaaaccctgccgtggtgcaacacattctcaaaactaacttcccttgctacaacaaaggtctcacaactcaccaaaacctcgtcgagtttctc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||| ||| ||||||||||| |
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| T |
31126681 |
cttcacggcaaaccctgccgtggtgcaacacattctcaaaaccaacttcccttgctacaacaaaggtctctcaagtcaccaaaccctactcgagtttctc |
31126780 |
T |
|
| Q |
219 |
ggcgacggtatcttcaataccgacggtgaaacctggaaggttcaacgacaaatctccagccatgaattcaacactaaatccctccgcaaattcgttgaaa |
318 |
Q |
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| T |
31126781 |
ggcgatggtatcttcaataccgatggtgaaatctggaaggttcaacgtcaaatatccagccatgaattcaacactaaatccctccgaaaattcgttgaaa |
31126880 |
T |
|
| Q |
319 |
ctgtcgtcgacgttgaactcaaggatcgtctgcttcctattctccatgaagcttccgataacaaaagtattctccctaatttccaagatattctccaacg |
418 |
Q |
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|||| ||||| ||||||||||| ||||| || ||||| |||||| ||||| ||| || ||||||| |||||| ||||||| ||||||||||||||||| |
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| T |
31126881 |
ctgttgtcgatgttgaactcaacgatcgccttcttccaattctctctgaagtttcggaaaacaaaacaattctcgctaattttcaagatattctccaacg |
31126980 |
T |
|
| Q |
419 |
ttttacatttgataatatttgcataattgcttttggattcgatccggagtatctcctcccttctct |
484 |
Q |
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| T |
31126981 |
tttcacgtttgataatatttgcataattgcgtttggatttgatccggagtatctcctcccttctct |
31127046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 21 - 484
Target Start/End: Original strand, 31131291 - 31131754
Alignment:
| Q |
21 |
gccaacttccaccgccgcatacaatggatatctgatatcctccaaaccgtcccttcctccaccttcatcctccaccgcgccttcggttcccgccaagtct |
120 |
Q |
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|||||||||||||||| |||||||||||| ||||| ||||||||||| | |||||||||||||| ||||||||||| ||||||| ||| || |||| |
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| T |
31131291 |
gccaacttccaccgcctcatacaatggatttctgacatcctccaaactataccttcctccacctttgtcctccaccgccccttcggctcctgctcagtca |
31131390 |
T |
|
| Q |
121 |
tcacggcaaaccctgccgtggtgcaacacattctcaaaactaacttcccttgctacaacaaaggtctcacaactcaccaaaacctcgtcgagtttctcgg |
220 |
Q |
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| T |
31131391 |
tcacggcaaaccccgtcgtagtccaacacattctaaaaaccaacttcccttgttacaacaaaggtcccacatttcatcaatccctcgttgagtttcttgg |
31131490 |
T |
|
| Q |
221 |
cgacggtatcttcaataccgacggtgaaacctggaaggttcaacgacaaatctccagccatgaattcaacactaaatccctccgcaaattcgttgaaact |
320 |
Q |
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| T |
31131491 |
taacggtatcttcaacaccgacggtgaaagttggaaggttcaacgacaaatctccagccatgaattcaacactaaatccccatgcaaattcatcgaaacg |
31131590 |
T |
|
| Q |
321 |
gtcgtcgacgttgaactcaaggatcgtctgcttcctattctccatgaagcttccgataacaaaagtattctccctaatttccaagatattctccaacgtt |
420 |
Q |
| |
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|| || || |||||||| || || ||||| |||||||||||||||||||| ||| | ||| ||| || |||||| |||| ||||||||||||||||||| |
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| T |
31131591 |
gtggtggatgttgaacttaacgaccgtctccttcctattctccatgaagcctccaaaaactaaatgatcctccctgattttcaagatattctccaacgtt |
31131690 |
T |
|
| Q |
421 |
ttacatttgataatatttgcataattgcttttggattcgatccggagtatctcctcccttctct |
484 |
Q |
| |
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|||| |||||||||||||||||||| | ||||||||||||||||| |||||| |||||||||| |
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| T |
31131691 |
ttacgtttgataatatttgcataatcacatttggattcgatccggaatatctcatcccttctct |
31131754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 20 - 469
Target Start/End: Original strand, 31077264 - 31077713
Alignment:
| Q |
20 |
cgccaacttccaccgccgcatacaatggatatctgatatcctccaaaccgtcccttcctccaccttcatcctccaccgcgccttcggttcccgccaagtc |
119 |
Q |
| |
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|||||||||||||||||| | || ||||| || || |||||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
31077264 |
cgccaacttccaccgccgtgtccactggatctccgacatcctccaaaccatcccttcttccaccttcatcctccaccgctccttcggttcccgccaagtt |
31077363 |
T |
|
| Q |
120 |
ttcacggcaaaccctgccgtggtgcaacacattctcaaaactaacttcccttgctacaacaaaggtctcacaactcaccaaaacctcgtcgagtttctcg |
219 |
Q |
| |
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|||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||| |||||||||||| | | | | ||| || ||||||| |
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| T |
31077364 |
ttcacggcaaaccccgccgtagtgcaacatattctcaaaaccaacttcccttgctaccgcaaaggtctcacgcttaaacgttccgtcggtgattttctcg |
31077463 |
T |
|
| Q |
220 |
gcgacggtatcttcaataccgacggtgaaacctggaaggttcaacgacaaatctccagccatgaattcaacactaaatccctccgcaaattcgttgaaac |
319 |
Q |
| |
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| ||||| ||||||| | ||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| || || || ||||| || ||||| |
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| T |
31077464 |
gggacggcatcttcagtgccgacggtgaaacttggaagtttcaacgacaaatttccagccatgaattcaacactaagtctctacgtaaatttgtcgaaac |
31077563 |
T |
|
| Q |
320 |
tgtcgtcgacgttgaactcaaggatcgtctgcttcctattctccatgaagcttccgataacaaaagtattctccctaatttccaagatattctccaacgt |
419 |
Q |
| |
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||||||||| ||||||||||| ||||||||||||||||||||| ||||||||| | ||| ||| |||| | | |||| |||||||| ||||||||| |
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| T |
31077564 |
tgtcgtcgaggttgaactcaatgatcgtctgcttcctattctctccgaagcttccaaaaaccaaacggttctgcttgattttcaagatatcctccaacgt |
31077663 |
T |
|
| Q |
420 |
tttacatttgataatatttgcataattgcttttggattcgatccggagta |
469 |
Q |
| |
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||||| || |||| ||| |||| ||| || |||||||||||||||||||| |
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|
| T |
31077664 |
tttacgttcgatagtatctgcagaatcgcgtttggattcgatccggagta |
31077713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 463
Target Start/End: Original strand, 38655085 - 38655151
Alignment:
| Q |
397 |
atttccaagatattctccaacgttttacatttgataatatttgcataattgcttttggattcgatcc |
463 |
Q |
| |
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|||||||||| |||||||||||||| || ||||| ||||| |||| ||| || ||||| |||||||| |
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| T |
38655085 |
atttccaagacattctccaacgtttcacgtttgacaatatctgcaaaatcgcgtttggtttcgatcc |
38655151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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