View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11728_low_5 (Length: 393)

Name: NF11728_low_5
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11728_low_5
NF11728_low_5
[»] chr4 (6 HSPs)
chr4 (16-382)||(42636086-42636443)
chr4 (332-382)||(23458712-23458762)
chr4 (332-382)||(56191456-56191506)
chr4 (332-382)||(56435057-56435107)
chr4 (338-382)||(20916820-20916863)
chr4 (338-382)||(31032755-31032798)
[»] chr6 (1 HSPs)
chr6 (330-382)||(29022861-29022913)
[»] chr5 (3 HSPs)
chr5 (331-382)||(16946325-16946376)
chr5 (332-380)||(15369476-15369524)
chr5 (338-382)||(19732091-19732135)
[»] scaffold0971 (1 HSPs)
scaffold0971 (332-382)||(1359-1409)
[»] chr8 (7 HSPs)
chr8 (332-382)||(26442032-26442082)
chr8 (332-380)||(9577688-9577736)
chr8 (332-380)||(13011054-13011102)
chr8 (332-380)||(13117838-13117886)
chr8 (332-380)||(13135574-13135622)
chr8 (332-380)||(18669006-18669054)
chr8 (332-380)||(13009814-13009862)
[»] chr7 (4 HSPs)
chr7 (332-382)||(48918578-48918628)
chr7 (332-380)||(28261779-28261827)
chr7 (332-380)||(41866287-41866335)
chr7 (338-380)||(31656853-31656895)
[»] chr2 (2 HSPs)
chr2 (332-382)||(2388808-2388858)
chr2 (338-382)||(35514112-35514155)
[»] chr1 (1 HSPs)
chr1 (332-382)||(45765018-45765068)
[»] scaffold0899 (1 HSPs)
scaffold0899 (332-382)||(2453-2503)
[»] chr3 (2 HSPs)
chr3 (338-382)||(26379293-26379336)
chr3 (338-382)||(29383688-29383731)


Alignment Details
Target: chr4 (Bit Score: 302; Significance: 1e-170; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 16 - 382
Target Start/End: Original strand, 42636086 - 42636443
Alignment:
Q  16 ctaacaaatactccaactctttgttcattgtagagacctcctaagccaagaaatatatatggccactattaattctttgttagcttggctaatctagaga 115  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  42636086 ctaacaaatactccaattctttgttcattgtagagacctcctaagccaagaaatttacatggccactattaatt-tttgttagcttggctaatctagaga 42636184  T
Q  116 aattctttgttattaatttttagttcaattgtttatcaaccaattatgtttttagttttacatgtgatgtgaaaaggttttaaggtttaggtccgcaagg 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  42636185 aattctttgttattaatttttagttcaattgtttatcaaccaattatgtttttagttttacatgtgatgtgaaaagg--------tttaggtccgcaagg 42636276  T
Q  216 atatttcgtttacctttttcaaagatatatgcgtgtgtaagtagctaagtaaatgtttgtgtatttgtaaattaaaactagaatgagttttaagaaagcg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||| |||||||||||||    
T  42636277 atatttcgtttacctttttcaaagatatatgcgtgtgtaagtagctaagttaatgtttgtgtatttgtaaatgaaaactagaatgacttttaagaaagcg 42636376  T
Q  316 gtcaaccagacatcaaggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42636377 gtcaacaagacatcaaggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 42636443  T

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Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 23458762 - 23458712
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23458762 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 23458712  T

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Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 56191506 - 56191456
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56191506 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 56191456  T

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Target: chr4; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 56435057 - 56435107
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  56435057 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 56435107  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 20916863 - 20916820
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  20916863 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 20916820  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 31032755 - 31032798
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  31032755 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 31032798  T

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Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 330 - 382
Target Start/End: Original strand, 29022861 - 29022913
Alignment:
Q  330 aaggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29022861 aaggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 29022913  T

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Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 331 - 382
Target Start/End: Complemental strand, 16946376 - 16946325
Alignment:
Q  331 aggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16946376 aggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 16946325  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 15369476 - 15369524
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15369476 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 15369524  T

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Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 19732135 - 19732091
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  19732135 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 19732091  T

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Target: scaffold0971 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: scaffold0971
Description:

Target: scaffold0971; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 1409 - 1359
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1409 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 1359  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 26442082 - 26442032
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26442082 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 26442032  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 9577688 - 9577736
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  9577688 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 9577736  T

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Target: chr8; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 13011102 - 13011054
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13011102 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 13011054  T

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Target: chr8; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 13117838 - 13117886
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13117838 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 13117886  T

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Target: chr8; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Original strand, 13135574 - 13135622
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  13135574 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 13135622  T

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Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 18669054 - 18669006
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  18669054 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 18669006  T

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Target: chr8; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 13009862 - 13009814
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13009862 ggtttcgtggtgtagttggttattacgtcagtctaacacactgaaggtc 13009814  T

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Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 48918628 - 48918578
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48918628 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 48918578  T

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Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 28261827 - 28261779
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28261827 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 28261779  T

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Target: chr7; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 332 - 380
Target Start/End: Complemental strand, 41866335 - 41866287
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41866335 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtc 41866287  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 338 - 380
Target Start/End: Complemental strand, 31656895 - 31656853
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtc 380  Q
    |||||||||||||||||||||| ||||| ||||||| ||||||    
T  31656895 gtggtgtagttggttatcacgttagtctcacacactaaaggtc 31656853  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 2388808 - 2388858
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2388808 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 2388858  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 35514112 - 35514155
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  35514112 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 35514155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 332 - 382
Target Start/End: Complemental strand, 45765068 - 45765018
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45765068 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 45765018  T

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Target: scaffold0899 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0899
Description:

Target: scaffold0899; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 332 - 382
Target Start/End: Original strand, 2453 - 2503
Alignment:
Q  332 ggtttcgtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2453 ggtttagtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 2503  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Complemental strand, 26379336 - 26379293
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  26379336 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 26379293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 338 - 382
Target Start/End: Original strand, 29383688 - 29383731
Alignment:
Q  338 gtggtgtagttggttatcacgtcagtctaacacactgaaggtctc 382  Q
    |||||||||| ||||||||||||||||| ||||||||||||||||    
T  29383688 gtggtgtagt-ggttatcacgtcagtcttacacactgaaggtctc 29383731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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