View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11728_low_7 (Length: 326)
Name: NF11728_low_7
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11728_low_7 |
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| [»] scaffold0127 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 1 - 309
Target Start/End: Original strand, 26609741 - 26610049
Alignment:
| Q |
1 |
tgttagttaatgacatgattcattagggaatgatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaat |
100 |
Q |
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| T |
26609741 |
tgttagttaatgacatgattcattagggaatgatacgatggagatggatctatacagctcacaaaagtcttcagatttgttttcatcgtggctgcctaat |
26609840 |
T |
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| Q |
101 |
cctaccttgaacatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattaactataatcaacgagtgtgtgttg |
200 |
Q |
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| T |
26609841 |
cctaccttgaacatgacatcttatcatgccacaattaacaactcaagtttcatatagaaaataaataagtgaattatctataatcaatgagtgtgtgttg |
26609940 |
T |
|
| Q |
201 |
aaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttac |
300 |
Q |
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| T |
26609941 |
aaggtaggtcttggatatgtggggagtgcattcgtgtctttgttggtgtttattttgtgtgttctgtttacatacgacatctttgtagtctctgatttac |
26610040 |
T |
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| Q |
301 |
cgatctctg |
309 |
Q |
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||||||||| |
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| T |
26610041 |
cgatctctg |
26610049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 309
Target Start/End: Complemental strand, 8987700 - 8987585
Alignment:
| Q |
195 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctct |
293 |
Q |
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| T |
8987700 |
gtgttgaaggtaggtcttaggtgggtgctgtgtgtatttcgtgtctttattggtgtttattttgggtgttccgcatatatatggtgccttcgtagtctct |
8987601 |
T |
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| Q |
294 |
gatttaccgatctctg |
309 |
Q |
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| T |
8987600 |
gatttaccaatctctg |
8987585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0127 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0127
Description:
Target: scaffold0127; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 230 - 300
Target Start/End: Complemental strand, 21301 - 21231
Alignment:
| Q |
230 |
attcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttac |
300 |
Q |
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| T |
21301 |
attcgtgtctttattgatgttcattttgggtgttccgcctatatacgacacctttgtagtctctgatttac |
21231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 195 - 308
Target Start/End: Complemental strand, 33283733 - 33283620
Alignment:
| Q |
195 |
gtgttgaaggtaggtcttggatatgtggtgagtgcattcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctg |
294 |
Q |
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| T |
33283733 |
gtgttgaaattaggtcttggataggtgatgtaggtattcgtgtttttatcggtgtttattttggatgttccgtctatatacaacgtctttataatctctg |
33283634 |
T |
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| Q |
295 |
atttaccgatctct |
308 |
Q |
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| T |
33283633 |
atttaccgatctct |
33283620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 241 - 307
Target Start/End: Original strand, 21029981 - 21030047
Alignment:
| Q |
241 |
tattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctc |
307 |
Q |
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| T |
21029981 |
tattggtgtttattttgggtgttccgcctacatacggcacctttgtagtctttgatttaccggtctc |
21030047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 291
Target Start/End: Original strand, 5746925 - 5747022
Alignment:
| Q |
195 |
gtgttgaaggtaggtcttggatatgtggtgagtgca-ttcgtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtct |
291 |
Q |
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| T |
5746925 |
gtgttgaaggtaggtcttaggtaggtgatgtgtgtaattcgtgtctttattgatgttcattttaggtgttccgcctatatacgacgcctttgtagtct |
5747022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 308
Target Start/End: Complemental strand, 43344593 - 43344519
Alignment:
| Q |
234 |
gtgtctttattggtgtttattttgtgtgttctgtctacatacgacatctttgtagtctctgatttaccgatctct |
308 |
Q |
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| T |
43344593 |
gtgtctttattggtgtttattttgagttttccgcctatatacggcacatttgtagtctctggtttaccggtctct |
43344519 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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