View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11728_low_8 (Length: 302)

Name: NF11728_low_8
Description: NF11728
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11728_low_8
NF11728_low_8
[»] chr7 (14 HSPs)
chr7 (11-297)||(4711437-4711723)
chr7 (22-297)||(4845376-4845663)
chr7 (22-297)||(4653940-4654227)
chr7 (22-297)||(4696542-4696841)
chr7 (11-297)||(4637301-4637596)
chr7 (7-297)||(4783184-4783486)
chr7 (7-297)||(4815613-4815915)
chr7 (11-297)||(4673147-4673445)
chr7 (24-291)||(4864372-4864654)
chr7 (23-133)||(4663310-4663420)
chr7 (22-297)||(4644151-4644426)
chr7 (158-220)||(4631451-4631513)
chr7 (23-141)||(4667550-4667668)
chr7 (252-297)||(4631371-4631416)
[»] chr4 (1 HSPs)
chr4 (181-297)||(18925280-18925393)


Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 11 - 297
Target Start/End: Original strand, 4711437 - 4711723
Alignment:
11 catcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaac 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4711437 catcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaac 4711536  T
111 aatcttacccttcttaaaaacttcagcccttattatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataa 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
4711537 aatcttacccttcttaaaaacttcagcccttattatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataa 4711636  T
211 ctttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
4711637 ctttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttttctct 4711723  T

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Target: chr7; HSP #2
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 4845376 - 4845663
Alignment:
22 cccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttaccct 121  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
4845376 cccctgtttttattcgccttcatttttacccaacttcataccagaactttgatccctccaatgctcttttctctgtcgaagtaaacaacaatcttaccct 4845475  T
122 tcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcata 209  Q
    ||||||||||||||||||||            || | |||  ||||||||| |||||||||||||||||||| ||||||||||||| |||||||| ||||    
4845476 tcttaaaaacttcagcccttcactttggcttcatgacgaggtggaaaaaattaccaaagaatattgcattcagatcaaaccaaatgggaagctaaacata 4845575  T
210 actttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    |||||| |||| |||||||||||  | |  ||||||| |||||||||| |||||||||||||| ||||||| |||||||||| |||||    
4845576 actttctttccgaacaacataaacgaattgaatcctttttatgctttcgttaacggaatcgaagttgtgtcgatgccttcttttctct 4845663  T

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Target: chr7; HSP #3
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 4654227 - 4653940
Alignment:
22 cccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttaccct 121  Q
    ||||||||||||   |||||||||||||||| ||||| || ||||| ||||| ||||| ||||| |||||||||||  ||||||||||||| ||||| ||    
4654227 cccctgtttttaaccgccttcatttttaccctacttcgtatcaaaaatttgaaccctcaaatgcacttttctctgttgaagtaaacaacaaacttacact 4654128  T
122 tcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcata 209  Q
    ||||||||||||||  ||||            || ||||   ||||| ||||||||||||||||||||| ||| || |||| ||| ||||||||| ||||    
4654127 tcttaaaaacttcaatccttcactttggattcatgatgatggggaaacaatcaccaaagaatattgcatccaagtccaaccgaataagaagctaaacata 4654028  T
210 actttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| ||||| ||| |||||||||||||||||| |||||    
4654027 actttcattcccaacaacacaaaccattcaaatccttattatgctttcattaatggaattgaagttgtgtctatgccttcttttctct 4653940  T

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Target: chr7; HSP #4
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 22 - 297
Target Start/End: Original strand, 4696542 - 4696841
Alignment:
22 cccctgtttttattagccttcatttttacccaacttcataccaaaactttga----------tccct--ccaatgctcttttctctgtcaaagtaaacaa 109  Q
    ||||||||||| || |||||||||||||||| ||||| |||| |||||||||          |||||  | ||||| ||||||||||| |||||||||||    
4696542 cccctgtttttcttcgccttcatttttacccgacttcgtaccgaaactttgaaccttctaattccctttcaaatgcacttttctctgttaaagtaaacaa 4696641  T
110 caatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgag 197  Q
    |||  ||||||||||||||||||||| |||||            || ||||  | ||||||||||||||||||||||||||||||| |||||||||||||    
4696642 caacgttacccttcttaaaaacttcaacccttctctttggttctatcatgatgacgaaaaaatcaccaaagaatattgcattcaaaccaaaccaaatgag 4696741  T
198 aagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    ||| ||| ||||||||||||||| | ||||||||| || |||||||||||||||||||||||||||||||| ||| ||||||| |||||||||| |||||    
4696742 aagttaaacataactttcattcccagcaacataaaccagtcaaatccttattatgctttcattaacggaatagaagttgtgtcaatgccttcttttctct 4696841  T

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Target: chr7; HSP #5
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 4637596 - 4637301
Alignment:
11 catcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaac 110  Q
    |||||||||  || |||||||| || | |||||||||||||| || || || ||||||||||| || |||| |||  |||||||||||||||| ||| ||    
4637596 catcactaattccactgtttttcttcgtcttcatttttaccctacatcttatcaaaactttgaaccttccagtgcaattttctctgtcaaagtgaacgac 4637497  T
111 aatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgaga 198  Q
       |||||||||||||||||||||| |||||            ||| |||  | |||||||||||||||||||||||||| ||||||||||||||||| |    
4637496 ---cttacccttcttaaaaacttcaaccctttgctttggctctattttgatgacgaaaaaatcaccaaagaatattgcatacaaatcaaaccaaatgaaa 4637400  T
199 agctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    || ||| ||||||||||||||| |||| |||||| || |||||||||| ||||||||| |||||||| |||||| ||||||| |||||||||| |||||    
4637399 agttaaacataactttcattcctaacagcataaaccaatcaaatccttgttatgcttttattaacgggatcgaagttgtgtcaatgccttcttttctct 4637301  T

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Target: chr7; HSP #6
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 4783184 - 4783486
Alignment:
7 acatcatcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaa 106  Q
    |||||||||||||| || || ||||| || ||||||||||||||||||||||||| ||||| |||||  ||||  |||| |||||||||||  |||||||    
4783184 acatcatcactaactccactatttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaa 4783283  T
107 caacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaat 194  Q
    ||||||  ||||||||||||||||||||| |||||            || ||||  || |  | |||  ||||||||||| ||| ||||||||||||||     
4783284 caacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaac 4783383  T
195 gagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctc 294  Q
    |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||||||||||| |||||||||||||||||| ||    
4783384 gagaagctaaacataactttcattcccaacaacacaaaccaattgattcctagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttc 4783483  T
295 tct 297  Q
    |||    
4783484 tct 4783486  T

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Target: chr7; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 4815613 - 4815915
Alignment:
7 acatcatcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaa 106  Q
    |||||||||||||| || || ||||| || ||||||||||||||||||||||||| ||||| |||||  ||||  |||| |||||||||||  |||||||    
4815613 acatcatcactaactccactatttttcttcgccttcatttttacccaacttcatatcaaaattttgaaacctcttatgcacttttctctgttgaagtaaa 4815712  T
107 caacaatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaat 194  Q
    ||||||  ||||||||||||||||||||| |||||            || ||||  || |  | |||  ||||||||||| ||| ||||||||||||||     
4815713 caacaacattacccttcttaaaaacttcaacccttcactttggcttcatcatgatgagaatcatatcgtcaaagaatattccatccaaatcaaaccaaac 4815812  T
195 gagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctc 294  Q
    |||||||||| ||||||||||||||| ||||||| ||| || |  | ||||  ||||||||||||||||||||||||| |||||||||||||||||| ||    
4815813 gagaagctaaacataactttcattcccaacaacacaaaccaattgagtcctagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttc 4815912  T
295 tct 297  Q
    |||    
4815913 tct 4815915  T

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Target: chr7; HSP #8
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 4673445 - 4673147
Alignment:
11 catcactaacacccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaac 110  Q
    |||||||||  || |||||||| || |||||||||||||||||| || ||   ||| ||||||||||||||||||  |||||||| ||||||| ||||||    
4673445 catcactaattccactgtttttcttcgccttcatttttacccaaatttatctaaaagctttgatccctccaatgcaattttctctatcaaagttaacaac 4673346  T
111 aatcttacccttcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgaga 198  Q
    ||| ||||||||||||||||||||| |||||            || || |  |||||| |||||||||||||| ||| || |||||||| || |||||||    
4673345 aatattacccttcttaaaaacttcaaccctttcctttggattcatgattatgaggaaacaatcaccaaagaattttgtatccaaatcaagcccaatgaga 4673246  T
199 agctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    |||||| ||||| ||||||||||| || ||| ||  | ||||||  | | |||||||||||||||||||||||||||||||| |||||||||| |||||    
4673245 agctaaacataaatttcattccaagcatcatgaacaaatcaaatgttaaatatgctttcattaacggaatcgaaattgtgtcaatgccttcttttctct 4673147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 24 - 291
Target Start/End: Complemental strand, 4864654 - 4864372
Alignment:
24 cctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttacccttc 123  Q
    ||||||||| || | ||||||||||||||||| || || ||||||||||| || || || ||  |||| || ||  |||||||||||||  |||||||||    
4864654 cctgtttttgttcgtcttcatttttacccaacatcttatcaaaactttgaaccttcgaaagcatttttttcagttgaagtaaacaacaaaattacccttc 4864555  T
124 ttaaaaacttcagccctt--------att-atgagaa---ggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataac 211  Q
    |||||||||||| |||||        ||| ||||  |   ||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||    
4864554 ttaaaaacttcaacccttcactttggattcatgaagatggggaaaaaatcaccaaagaatattgcattcaaatcaaatcaaatgagaagctaaacataac 4864455  T
212 tttcattcca---aacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttctt 291  Q
    |||||||||    || || |||||||| ||||||||||||||||| |||||||| ||||| ||| | ||||||||||||||||    
4864454 tttcattccggccaataatataaatcaatcaaatccttattatgccttcattaatggaatagaagtcgtgtctatgccttctt 4864372  T

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Target: chr7; HSP #10
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 23 - 133
Target Start/End: Complemental strand, 4663420 - 4663310
Alignment:
23 ccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttaccctt 122  Q
    |||||||||| || |||||||||||||| |||| || ||  |||||||||| ||||||||||| ||||||||||||||| ||||| ||||||||||||||    
4663420 ccctgtttttcttcgccttcatttttactcaacatcttataaaaactttgaaccctccaatgcacttttctctgtcaaactaaacgacaatcttaccctt 4663321  T
123 cttaaaaactt 133  Q
    |||||||||||    
4663320 cttaaaaactt 4663310  T

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Target: chr7; HSP #11
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 22 - 297
Target Start/End: Complemental strand, 4644426 - 4644151
Alignment:
22 cccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttaccct 121  Q
    ||||||||||| || ||||| ||||||||||  | || || ||||| ||||| ||||| ||||| ||||||||||||||||||||||||||||| |||||    
4644426 cccctgtttttcttcgcctttatttttaccctgcatcgtatcaaaattttgaaccctcaaatgcacttttctctgtcaaagtaaacaacaatctcaccct 4644327  T
122 tcttaaaaacttcagccctt------------attatgagaaggaaaaaatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcata 209  Q
    |||| ||||||||| |||||            || ||||  || | || |||| |||||| |||||||| ||||| ||| ||||||||||||||| ||||    
4644326 tcttcaaaacttcaacccttcactttggcttcatcatgatgagaataatatcatcaaagagtattgcatccaaattaaaacaaatgagaagctaaacata 4644227  T
210 actttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    |||||||||||  |||           ||||||  |  ||||||||||||||||||||||||| |||||||||||||||||| |||||    
4644226 actttcattcc-caca-----------tcaaatgttagttatgctttcattaacggaatcgaagttgtgtctatgccttcttttctct 4644151  T

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Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 158 - 220
Target Start/End: Complemental strand, 4631513 - 4631451
Alignment:
158 aatcaccaaagaatattgcattcaaatcaaaccaaatgagaagctaagcataactttcattcc 220  Q
    ||||||||||||||||||||| |||||    |||||||||||||||| |||||||||||||||    
4631513 aatcaccaaagaatattgcatacaaattgctccaaatgagaagctaaacataactttcattcc 4631451  T

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Target: chr7; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 141
Target Start/End: Complemental strand, 4667668 - 4667550
Alignment:
23 ccctgtttttattagccttcatttttacccaacttcataccaaaactttgatccctccaatgctcttttctctgtcaaagtaaacaacaatcttaccctt 122  Q
    |||||||||| || |||| |||||||||||||| || || |||||||||||  ||||||| ||||| ||| | |||||||||   | ||| |||||||||    
4667668 ccctgtttttcttcgcctccatttttacccaacatcgtatcaaaactttgaaacctccaacgctctcttcacagtcaaagtaggaaccaaccttaccctt 4667569  T
123 cttaaaaacttcagccctt 141  Q
    || ||| |||| |||||||    
4667568 ctcaaagactttagccctt 4667550  T

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Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 297
Target Start/End: Complemental strand, 4631416 - 4631371
Alignment:
252 gctttcattaacggaatcgaaattgtgtctatgccttcttctctct 297  Q
    |||||||| |||||||| || ||||||||||||||||||| |||||    
4631416 gctttcatcaacggaattgagattgtgtctatgccttcttttctct 4631371  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 297
Target Start/End: Original strand, 18925280 - 18925393
Alignment:
181 aaatcaaaccaaatgagaagctaagcataactttcattccaaacaacataaatcattcaaatccttattatgctttcattaacggaatcgaaattgtgtc 280  Q
    |||| ||||||| ||||||| |||  ||||||||||||||||||| |||||||||  ||||  |   |||||||||||| |||||||| || || |||||    
18925280 aaatgaaaccaactgagaagttaaatataactttcattccaaacaccataaatcaaccaaaggc---ttatgctttcatcaacggaattgagatcgtgtc 18925376  T
281 tatgccttcttctctct 297  Q
     |||||||||| |||||    
18925377 catgccttcttttctct 18925393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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