View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_high_15 (Length: 503)

Name: NF11729_high_15
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_high_15
NF11729_high_15
[»] chr3 (4 HSPs)
chr3 (71-353)||(26227411-26227693)
chr3 (408-489)||(26227094-26227175)
chr3 (356-409)||(26227238-26227291)
chr3 (18-52)||(26227689-26227723)
[»] chr2 (1 HSPs)
chr2 (50-228)||(28760046-28760223)
[»] chr5 (1 HSPs)
chr5 (21-297)||(36498030-36498305)
[»] scaffold0320 (1 HSPs)
scaffold0320 (76-190)||(6973-7086)
[»] scaffold0167 (1 HSPs)
scaffold0167 (76-190)||(9698-9811)
[»] chr8 (2 HSPs)
chr8 (253-296)||(15926822-15926865)
chr8 (150-296)||(19708983-19709124)


Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 71 - 353
Target Start/End: Complemental strand, 26227693 - 26227411
Alignment:
Q  71 aatgaaaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaag 170  Q
    ||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||||||||  |||||||| ||||||||||||| ||||||||||     
T  26227693 aatgaaaagactccactaaatttgtaactgaaaagtggtggcccactatatcttgaaagttgtatagtaaaggggaaattgaaaagaccatttttgaaaa 26227594  T
Q  171 taatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatattttttctagtcgaaaatgacattttt 270  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||||||||||||    
T  26227593 taatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaaatgccaatttttgtcttcatattttttctagtcgaaaatgacattttt 26227494  T
Q  271 aggtgcaatttgttggcctgtaatttttgggaggtaatttgttagccctacttccactttttaattcacataacattaatttt 353  Q
    ||| ||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| ||||    
T  26227493 aggagcaatttgttggcctataatttttgggaggtaatttgttagctctacttccactttttaattcacgtaacattagtttt 26227411  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 408 - 489
Target Start/End: Complemental strand, 26227175 - 26227094
Alignment:
Q  408 tgaataagaaagggaagagtttccttcaaaaaacaaaagggaagnnnnnnnncaacaattaaataccatttatcgtgttcat 489  Q
    ||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||    
T  26227175 tgaataagaaagggaagagtttccttcaaaaaacaaaagggaagttttttttcaacaattaaataccatttatcgtgttcat 26227094  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 356 - 409
Target Start/End: Complemental strand, 26227291 - 26227238
Alignment:
Q  356 ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26227291 ctatgtttaatttaaccttaaaatattgcatacccggtcatccaaggccatatg 26227238  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 26227723 - 26227689
Alignment:
Q  18 cacgaaggagaggaagatgaagggttaacaaatga 52  Q
    |||||||||||||||||||||||||||||||||||    
T  26227723 cacgaaggagaggaagatgaagggttaacaaatga 26227689  T

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Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 50 - 228
Target Start/End: Original strand, 28760046 - 28760223
Alignment:
Q  50 tgacatttggtgtcctagggcaatgaaaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaat 149  Q
    ||||| |||||| |||||||||||| |||||||||||||| |||| ||| | ||||||| ||||||||| |||||| ||||||| |  |||| | | |||    
T  28760046 tgacacttggtgccctagggcaatggaaagaccccactaacttttcaactgcaaagtggcggcccactaaatcttg-aagttgtgcaataaaagaagaat 28760144  T
Q  150 tgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttcca 228  Q
    ||||||||||||| ||| ||||||| |  | ||||| ||||| |||| | || ||||| | |||||||||||| |||||    
T  28760145 tgaaaagactattcttggaagtaattagaaacatgatgtcatcctccaaggagtacataatgtattttcaaaaattcca 28760223  T

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Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 21 - 297
Target Start/End: Original strand, 36498030 - 36498305
Alignment:
Q  21 gaaggagaggaagatgaagggttaacaaatgacatttggtgtcctagggcaa-tgaaaagaccccactaaatttttaacaggaaagtggtggcccactat 119  Q
    |||||||  |||||||||| |||||||| ||||| |||||| | |||||||| || ||||||||| |||| |||| |||   ||| |||||||||||||     
T  36498030 gaaggaggtgaagatgaagagttaacaagtgacacttggtgccttagggcaaatggaaagaccccgctaacttttcaactacaaattggtggcccactaa 36498129  T
Q  120 a-tcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttc 218  Q
    | ||||| ||||||| |  | || | |||||||||||||| ||| ||||||||||| ||||||||| ||||  ||||  |||||||| |  ||| ||||     
T  36498130 attcttg-aagttgtgcattgaaagaaaaattgaaaagaccattcttgaaagtaataattagcatggcgtccgtctcgaaagaatacttagagt-tttta 36498227  T
Q  219 aaaatttccaattttcgtcttcatattttttctagtcg-aaaatgacatttttaggtgcaatttgttggcctgtaatttt 297  Q
    |||| |  ||||||||  ||||  || ||||| ||||| |||||||||||||| || |||||||||| || || ||||||    
T  36498228 aaaaatgtcaattttctccttc--atgttttcaagtcgaaaaatgacatttttgggggcaatttgttagcgtgcaatttt 36498305  T

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Target: scaffold0320 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 190
Target Start/End: Complemental strand, 7086 - 6973
Alignment:
Q  76 aaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatg 175  Q
    |||| |||||||||||||| ||| | ||||||||||||| ||| |||||||||| ||| | | ||| ||||| |||||||||| | | ||||||| |||     
T  7086 aaaggccccactaaattttcaactgcaaagtggtggcccgctaaatcttgaaag-tgtgcagcaaaaggaaagttgaaaagaccactcttgaaagcaata 6988  T
Q  176 attagcatgacgtca 190  Q
    |||||||||||||||    
T  6987 attagcatgacgtca 6973  T

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Target: scaffold0167 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 76 - 190
Target Start/End: Original strand, 9698 - 9811
Alignment:
Q  76 aaagaccccactaaatttttaacaggaaagtggtggcccactatatcttgaaagttgtacggtaaagggaaaattgaaaagactatttttgaaagtaatg 175  Q
    |||| |||||||||||||| ||| | ||||||||||||| ||| |||||||||| ||| | | ||| ||||| |||||||||| | | ||||||| |||     
T  9698 aaaggccccactaaattttcaactgcaaagtggtggcccgctaaatcttgaaag-tgtgcagcaaaaggaaagttgaaaagaccactcttgaaagcaata 9796  T
Q  176 attagcatgacgtca 190  Q
    |||||||||||||||    
T  9797 attagcatgacgtca 9811  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 253 - 296
Target Start/End: Original strand, 15926822 - 15926865
Alignment:
Q  253 gtcgaaaatgacatttttaggtgcaatttgttggcctgtaattt 296  Q
    |||||||||||||||||| || ||| ||||||||||||||||||    
T  15926822 gtcgaaaatgacatttttgggggcattttgttggcctgtaattt 15926865  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 150 - 296
Target Start/End: Original strand, 19708983 - 19709124
Alignment:
Q  150 tgaaaagactatttttgaaagtaatgattagcatgacgtcattctcctaagaatacatgaagtattttcaaaatttccaattttcgtcttcatatttttt 249  Q
    |||||||| || | ||||||||||| |||| ||||||||||| |||| || |||||||  ||| ||||||||| | |||| ||||  |||||||||||      
T  19708983 tgaaaagaatactcttgaaagtaataattatcatgacgtcatcctcc-aaaaatacat--agtgttttcaaaaatgccaactttctccttcatatttt-- 19709077  T
Q  250 ctagtcgaaaatgaca-tttttaggtgcaatttgttggcctgtaattt 296  Q
     ||||| |||||| || ||||| || |||||||||| ||| |||||||    
T  19709078 -tagtcaaaaatggcattttttgggggcaatttgttagccagtaattt 19709124  T

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