View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_17 (Length: 493)
Name: NF11729_high_17
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_17 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 137 - 468
Target Start/End: Complemental strand, 44259555 - 44259223
Alignment:
| Q |
137 |
tcgttgccccaaatctaaaaacaagagggt-ccacaagacagtgtatagaatctgaagcaagtaaagcaaaagagcagttagatctctatgaaagccacc |
235 |
Q |
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| T |
44259555 |
tcgttgccccaaatctaaaaacaagagggttccacaagacagtgtatagaatctgaagcaagtaaagcaaaagagcagttagatctctatgaaagccacc |
44259456 |
T |
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| Q |
236 |
agcagcccacaccatccaagctgaaagtcccatcaagaagcttgaagcaggtaaaagaaggtgtaaggcccatgatggtggaaaccaaaaaggcttttta |
335 |
Q |
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| T |
44259455 |
agcagcccacaccatccaagctgaaagtcccatcaagaagcttgaagaaggtaaaagaaggtgtaaggcccatgatggtggaaaccaaaaaggcttttta |
44259356 |
T |
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| Q |
336 |
gaaccggttattacttctttgttgtggtttgagaaggtgaaagaagaggacatgtaaatggataaaagggttattgatagaggaaatgaaacagctatta |
435 |
Q |
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| T |
44259355 |
gaaccggttattacttctttgttgtggtttgagaaggtgaaagaagaggatatgtaaatggataaaagggttattgatagaggaaatgaaacagctatta |
44259256 |
T |
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| Q |
436 |
tgagtgatctaagaccacctttggccatcttca |
468 |
Q |
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| T |
44259255 |
tgagtgatctaagaccacctttggccatcttca |
44259223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 44259680 - 44259618
Alignment:
| Q |
12 |
aagaaaagcaatcaaagccaagcaaggctttatcaaattagcagcaacaggattaactttctt |
74 |
Q |
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| T |
44259680 |
aagaaaagcaatcaaagccaaacaaggctttatcaaattagcagcaacaggattaactttctt |
44259618 |
T |
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