View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_18 (Length: 491)
Name: NF11729_high_18
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_18 |
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Alignment Details
Target: chr7 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 4 - 479
Target Start/End: Complemental strand, 42444451 - 42443976
Alignment:
| Q |
4 |
tatttctgtgtacgaacatcaaatataatctcttgtacatagacgcaataaaattcatgacagttcataatagtttctttcttcagcaggaacgataacg |
103 |
Q |
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|||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |
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| T |
42444451 |
tatttctgtgtacgcacatcaaatataatctcttatacatagacgcaataaaattcatgacagttcataatagtttctttcttaagcaggaacgatatcg |
42444352 |
T |
|
| Q |
104 |
tatatgatattccagcctaataaattctcatacagaagatgcattacaacaataacaaaatcaaccaccccgggcttctctccttgtggcatcgtgcaat |
203 |
Q |
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||||||||||||||||||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444351 |
tatatgatattccagcctaatgaattctcatacagaagatacattacaacaatagcaaaatcaaccaccccgggcttctctccttgtggcatcgtgcaat |
42444252 |
T |
|
| Q |
204 |
agttcgatgtccaccccttctggcggcaattgcacgtatctcaccaccgatcctctgatgaagcagttccttacagaaagctgacatcaaacaatacgtc |
303 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444251 |
agttcgatgtccaccccttctggcggcaattgcacgtatctcaccaccgatcctctgatgaagcagttccttacagaaagctgacatcaaacaatacgtt |
42444152 |
T |
|
| Q |
304 |
actgactaatccataacaaaaatagaatcaaatctgaagctagttaggtcaatcaaattaagagtcaaatataataaaatcaaccggaaaataacataca |
403 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42444151 |
actgactaatccataacaaaaatagaatcaaatctgaagctagttaggtcaatcaaattaagagtcaaatataataaaatcaaccggaaaataacataca |
42444052 |
T |
|
| Q |
404 |
gtttgccctttataagtgcataaggtaatacgagggtttgataaatttgggtatattttagctaattctactgttc |
479 |
Q |
| |
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| T |
42444051 |
gtttgccctttataagtgcataaggtaatacgagggtttgataaatttgggtatattttagctaattctactgttc |
42443976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 71 - 406
Target Start/End: Complemental strand, 37619241 - 37618897
Alignment:
| Q |
71 |
taatagtttctt-tcttcagcaggaacgataacgtatatgatattccagcctaataaattctcatacagaagatgcattacaacaataacaaaatcaacc |
169 |
Q |
| |
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|||||||||||| |||| |||||||| |||||| | ||||||||||||||| | ||||||||||| ||||| |||||||| | ||||||| |||||| |
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| T |
37619241 |
taatagtttcttctcttaagcaggaatgataacatctatgatattccagccgatcgaattctcatacc-aagatacattacaagattaacaaa-tcaacc |
37619144 |
T |
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| Q |
170 |
accccgggcttctctccttgtggcatcgtgcaatagttcgatgtccaccccttctggcggcaattgcacgtatctcaccaccgatcctctgatgaagcag |
269 |
Q |
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||||||||||||||||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| |||||||||||||| |||||||||||||||||| |
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| T |
37619143 |
accccgggcttctctccttgtggcatcatgcaacagttcaatgtccacaccttctggaggcaattgtacgtatctcaccactgatcctctgatgaagcag |
37619044 |
T |
|
| Q |
270 |
ttccttacagaaagctgacatcaaacaat---acgtcactgactaatccataacaaaaatagaatcaaatctgaagctagttagg-----tcaatcaaat |
361 |
Q |
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|||||||||||||||||| |||||||||| | || || ||||||| | | |||||| ||||||||||||||| ||||||| |||||||||| |
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| T |
37619043 |
ttccttacagaaagctgaaatcaaacaatgacatgttacagactaatgaacgattaaaatacaatcaaatctgaagcaagttaggtctgatcaatcaaat |
37618944 |
T |
|
| Q |
362 |
ta--agagtcaaatataataaaatcaaccggaaaataacatacagtt |
406 |
Q |
| |
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| |||| ||||||||| |||||||| ||||||| ||||||||||| |
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| T |
37618943 |
aaagagagccaaatataacaaaatcaaacggaaaacaacatacagtt |
37618897 |
T |
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