View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_high_27 (Length: 373)

Name: NF11729_high_27
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_high_27
NF11729_high_27
[»] chr1 (20 HSPs)
chr1 (17-353)||(2020466-2020823)
chr1 (159-360)||(2011206-2011407)
chr1 (170-358)||(2012705-2012893)
chr1 (189-360)||(2007220-2007391)
chr1 (168-357)||(1793453-1793642)
chr1 (178-357)||(4334124-4334303)
chr1 (183-357)||(3379481-3379655)
chr1 (191-355)||(3373460-3373624)
chr1 (35-140)||(2007499-2007604)
chr1 (168-357)||(3362470-3362659)
chr1 (254-357)||(3342004-3342107)
chr1 (186-357)||(4322244-4322415)
chr1 (78-153)||(2011471-2011548)
chr1 (183-332)||(6600951-6601100)
chr1 (52-128)||(1793701-1793777)
chr1 (44-105)||(2013019-2013080)
chr1 (183-235)||(4332673-4332725)
chr1 (299-355)||(3193375-3193431)
chr1 (299-355)||(3202193-3202249)
chr1 (299-355)||(3211030-3211086)
[»] chr4 (1 HSPs)
chr4 (183-357)||(21238233-21238407)
[»] chr2 (3 HSPs)
chr2 (173-357)||(20953722-20953906)
chr2 (173-357)||(20935184-20935368)
chr2 (253-357)||(20924183-20924287)
[»] chr5 (1 HSPs)
chr5 (168-355)||(17970521-17970708)


Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 17 - 353
Target Start/End: Complemental strand, 2020823 - 2020466
Alignment:
Q  17 atattgaacccaacgcataacttctgtaggcaatcgtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaactttaaatgtact 116  Q
    |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2020823 atattgaacccaacgcataacttctgcaggcaatcgtaactcaagtgtacaagttttagaaactaacttccaatactaaactgggaactttaaatgtact 2020724  T
Q  117 aaacaaatacttaacgcagaaaaaggtttgcgatttccttcccagcaaataaaagtcaagttaaag---------------------taaatgagtactc 195  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                     |||||||||||||    
T  2020723 aaacaaatacttaacgcagaaaaaggtttgcgatttccttcccagcaaataaaagtcaagttaaagtaaagaaaagtcaagtcaaagtaaatgagtactc 2020624  T
Q  196 acaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaacaaaagat 295  Q
    |||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| |||||||||||| ||| ||||||    
T  2020623 acaattatttctagttttttaagattaggcgagcttctgaacacacatagagcagttgaaatttccttaaagtcatagaagtttatactaaaccaaagat 2020524  T
Q  296 atgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaata 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2020523 atgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagctaaata 2020466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 159 - 360
Target Start/End: Complemental strand, 2011407 - 2011206
Alignment:
Q  159 cagcaaataaaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatt 258  Q
    ||||||| ||||||||| | ||||||||||||||||||||||||||| ||||| |||||||||||| | |||||||||||||| ||||||||||||||||    
T  2011407 cagcaaagaaaagtcaattcaaagtaaatgagtactcacaaatatttttagttctttaagattaggcgagcttctgaacacacttagagcagttgaaatt 2011308  T
Q  259 tccttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactgat 358  Q
    |||||||||||||||||||||||||||||| | ||| |  |||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||||    
T  2011307 tccttcaactcattgaagtttatacttaaccatagagacattagattaatacaaggtgtaggaagctttagtggcacaacacctgcagctaaatactgat 2011208  T
Q  359 gt 360  Q
    ||    
T  2011207 gt 2011206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 170 - 358
Target Start/End: Complemental strand, 2012893 - 2012705
Alignment:
Q  170 agtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactc 269  Q
    |||||||  ||| ||||||||||||||||||||| | || || |||||||||||| | ||||||||||||||||||||||||||||||||| ||||| ||    
T  2012893 agtcaagccaaactaaatgagtactcacaaatatatttaattctttaagattaggcgagcttctgaacacacatagagcagttgaaatttctttcaagtc 2012794  T
Q  270 attgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactgat 358  Q
     | |||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||    
T  2012793 gtagaagtttatacttaaccaaagatacgttagattaatacaaggtgtaggaagctttactggcacaacacctgcagctaaatactgat 2012705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 189 - 360
Target Start/End: Complemental strand, 2007391 - 2007220
Alignment:
Q  189 agtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaac 288  Q
    ||||||||||||||| | || || |||||||||||| | ||| |||||||||||||||||||||||||||||||| || |||| |||||||||||| |||    
T  2007391 agtactcacaaatatatttaattctttaagattaggcgagctcctgaacacacatagagcagttgaaatttccttaaagtcatagaagtttatactaaac 2007292  T
Q  289 aaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactgatgt 360  Q
     ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2007291 caaagatatgttagattaatacaaggtgtaggaagctttactggaacagcacctgcagccaaatactgatgt 2007220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 168 - 357
Target Start/End: Complemental strand, 1793642 - 1793453
Alignment:
Q  168 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 267  Q
    |||||||||  ||| |||||||| |||||| ||||| | ||||| |||||||||||| | |||||| ||||| |||||||||| |||||||||||||||     
T  1793642 aaagtcaagccaaactaaatgagcactcactaatatatgtagttctttaagattaggcgagcttctaaacacgcatagagcagctgaaatttccttcaag 1793543  T
Q  268 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    |||||||||||||| |||||| |||||||||||| ||| |||||||||||||||||| ||  ||| |||||||||||||  |||||||||    
T  1793542 tcattgaagtttatgcttaaccaaagatatgttatattgatacaaggtgtaggaagcattgttggcacaacacctgcagataaatactga 1793453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 178 - 357
Target Start/End: Original strand, 4334124 - 4334303
Alignment:
Q  178 taaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagt 277  Q
    |||| |||| ||||||||||| |||||| || ||||| ||| ||||||| ||||||||||||||| ||||| |  |||||||||| ||  | || |||||    
T  4334124 taaactaaacgagtactcacagatatttttaatttttgaaggttaggtgagcttctgaacacacaaagagcggccgaaatttcctccatgttatcgaagt 4334223  T
Q  278 ttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    ||||  ||||  ||||| |  |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  4334224 ttatggttaaggaaagaaaacttagattaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 4334303  T

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Target: chr1; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 183 - 357
Target Start/End: Complemental strand, 3379655 - 3379481
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 282  Q
    ||||| |||||||||||||||||| | ||||||||| ||||| | |||||||| ||  || || ||||  ||||||||||||||  ||||||||||||||    
T  3379655 taaataagtactcacaaatatttccaattttttaaggttaggggagcttctgagcaagcaaagggcagccgaaatttccttcaagacattgaagtttata 3379556  T
Q  283 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    | |||  |||||||  ||||||  |||||||||||||||||||||||||  ||| ||||||||||||||||||||    
T  3379555 cataaggaaagataacttagatcgatacaaggtgtaggaagctttactgatacatcacctgcagccaaatactga 3379481  T

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Target: chr1; HSP #8
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 191 - 355
Target Start/End: Complemental strand, 3373624 - 3373460
Alignment:
Q  191 tactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatacttaacaa 290  Q
    |||||||||||||||||| ||||||||||||||||| |||||||| ||  || ||||||| ||||||||||||||| |||||||||||||| | |||  |    
T  3373624 tactcacaaatatttctaattttttaagattaggtgagcttctgagcaagcaaagagcagctgaaatttccttcaagtcattgaagtttatgcataagga 3373525  T
Q  291 aagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 355  Q
    ||| |    |||  | |||||||||| ||||||||||||||| ||| || |||||||||||||||    
T  3373524 aagctcacataggctgatacaaggtgcaggaagctttactggcacatcatctgcagccaaatact 3373460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 35 - 140
Target Start/End: Complemental strand, 2007604 - 2007499
Alignment:
Q  35 aacttctgtaggcaatcgtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaactttaaatgtactaaacaaatacttaacgca 134  Q
    |||||||| ||||||||||||| ||||||||||||||||||||| ||| |||||||||| || ||||||||| ||| | |||||| |||||||||| |||    
T  2007604 aacttctgcaggcaatcgtaactcaagtgtacaagttttagaaaataatttccaatactggattgggaacttgaaaggcactaaaaaaatacttaaagca 2007505  T
Q  135 gaaaaa 140  Q
     |||||    
T  2007504 aaaaaa 2007499  T

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Target: chr1; HSP #10
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 168 - 357
Target Start/End: Complemental strand, 3362659 - 3362470
Alignment:
Q  168 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 267  Q
    |||||||||  ||| |||| |||||||||||| |||||| | ||||  ||||||||||| |||| ||| ||  || |||||||   |||||| ||||||     
T  3362659 aaagtcaagccaaactaaacgagtactcacaattatttccaattttcgaagattaggtgagcttttgagcaagcaaagagcagccaaaattttcttcaag 3362560  T
Q  268 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    |||| ||||| ||| | |||  |||||| | | ||||| ||||||||||| |||||||||| ||| ||||||||||||||||||||||||    
T  3362559 tcatcgaagtctatgcataaggaaagatgtctgagattgatacaaggtgtgggaagctttattggcacaacacctgcagccaaatactga 3362470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 254 - 357
Target Start/End: Complemental strand, 3342107 - 3342004
Alignment:
Q  254 aaatttccttcaactcattgaagtttatactta-acaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaat 352  Q
    |||||| |||||| |||||||||||||| |||| || ||| || | ||||||| |||||||||||||||||||||||||| |||| ||||||||||||||    
T  3342107 aaattttcttcaagtcattgaagtttatgcttacacgaaaaattt-ttagattgatacaaggtgtaggaagctttactggcacaatacctgcagccaaat 3342009  T
Q  353 actga 357  Q
    |||||    
T  3342008 actga 3342004  T

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Target: chr1; HSP #12
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 186 - 357
Target Start/End: Original strand, 4322244 - 4322415
Alignment:
Q  186 atgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttatactt 285  Q
    ||||||||||||| ||||||||| |||   |||||| |||  ||||| || || ||| ||||||||  ||||||||  ||  | || ||||||||  |||    
T  4322244 atgagtactcacatatatttctaatttcagaagattgggttagcttcggagcaaacaaagagcagtcaaaatttccgccatgttatcgaagtttacgctt 4322343  T
Q  286 aacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    ||  ||||| |  |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  4322344 aaagaaagaaaacttagatcaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 4322415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 78 - 153
Target Start/End: Complemental strand, 2011548 - 2011471
Alignment:
Q  78 actaacttccaatacta--gactgggaactttaaatgtactaaacaaatacttaacgcagaaaaaggtttgcgatttc 153  Q
    |||||||||||||||||  || || |||||||||| | ||||||||||||||||||||||||||| ||||||||||||    
T  2011548 actaacttccaatactatagattgtgaactttaaaggcactaaacaaatacttaacgcagaaaaaagtttgcgatttc 2011471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 183 - 332
Target Start/End: Original strand, 6600951 - 6601100
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 282  Q
    ||||| ||||||||| |||||||| |||| |   |||||||||| ||||||||| |  || ||||||| ||||||||||||  | |||| |||||||||     
T  6600951 taaataagtactcaccaatatttcgagttctcgtagattaggtgagcttctgaaaaggcaaagagcagctgaaatttcctttgaatcatagaagtttatg 6601050  T
Q  283 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactgg 332  Q
    | ||   |||||||  |||||| ||| ||||| |||||||||||||||||    
T  6601051 cgtatggaaagataacttagatcaatgcaaggggtaggaagctttactgg 6601100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 52 - 128
Target Start/End: Complemental strand, 1793777 - 1793701
Alignment:
Q  52 gtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaactttaaatgtactaaacaaatactt 128  Q
    ||||| |||||||||||||||||||| | |||||||||||||||| ||  ||||| ||| | |||| ||||||||||    
T  1793777 gtaactcaagtgtacaagttttagaatcaaacttccaatactagattgacaacttgaaaggcactagacaaatactt 1793701  T

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Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 2013080 - 2013019
Alignment:
Q  44 aggcaatcgtaacccaagtgtacaagttttagaaactaacttccaatactagactgggaact 105  Q
    ||||||| ||| | |||||| |||| ||||||||||||||||||||||||||| | ||||||    
T  2013080 aggcaattgtagctcaagtgcacaaattttagaaactaacttccaatactagattaggaact 2013019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 235
Target Start/End: Original strand, 4332673 - 4332725
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctga 235  Q
    |||||||||||||||| ||||||||| ||||  ||||||||||| ||||||||    
T  4332673 taaatgagtactcacagatatttctacttttcgaagattaggtgagcttctga 4332725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 3193375 - 3193431
Alignment:
Q  299 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 355  Q
    ||||||| |||||| |||| ||||||||||| || ||| |||||||| |||||||||    
T  3193375 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatact 3193431  T

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Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 3202193 - 3202249
Alignment:
Q  299 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 355  Q
    ||||||| |||||| |||| ||||||||||| || ||| |||||||| |||||||||    
T  3202193 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatact 3202249  T

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Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 299 - 355
Target Start/End: Original strand, 3211030 - 3211086
Alignment:
Q  299 ttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 355  Q
    ||||||| |||||| |||| ||||||||||| || ||| |||||||| |||||||||    
T  3211030 ttagattgatacaacgtgtcggaagctttacgggcacatcacctgcatccaaatact 3211086  T

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Target: chr4 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 183 - 357
Target Start/End: Complemental strand, 21238407 - 21238233
Alignment:
Q  183 taaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcattgaagtttata 282  Q
    |||| ||||||||||| |||||| || ||||   |||||||||| |||||||| ||  || |||||||  || ||||||||||| ||||||||||||||     
T  21238407 taaacgagtactcacagatatttttaattttcgcagattaggtgagcttctgagcaagcagagagcagccgagatttccttcaagtcattgaagtttatg 21238308  T
Q  283 cttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
     ||||||||||||   |||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  21238307 tttaacaaaagatggcttagatgaatacaaggtgtaggaagctttactggaacgacacctgcagccaaatactga 21238233  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 173 - 357
Target Start/End: Complemental strand, 20953906 - 20953722
Alignment:
Q  173 caagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcatt 272  Q
    |||| |||| |||||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||  || |||||||  ||||||||||| |  |  |     
T  20953906 caagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttcctttaggttgtc 20953807  T
Q  273 gaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    ||||||||| | |||  |||||||  |||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  20953806 gaagtttatgcataaggaaagatagcttagataaatacaaggtgtaggaagctttactggcaaaacacctgcagccaaatactga 20953722  T

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Target: chr2; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 173 - 357
Target Start/End: Complemental strand, 20935368 - 20935184
Alignment:
Q  173 caagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaactcatt 272  Q
    |||| |||| |||||||||||||||||||||||||| ||||  ||||||||||| |||||||| ||  || |||||||  |||||||||||||| ||||     
T  20935368 caagctaaactaaatgagtactcacaaatatttctaattttcgaagattaggtgagcttctgagcaagcaaagagcagccgaaatttccttcaagtcatc 20935269  T
Q  273 gaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatactga 357  Q
    ||||||||| || ||  ||||||   ||||||  |||||||||||||||||||||  ||| | ||||||||||| || |||||||    
T  20935268 gaagtttatgctcaaggaaagatgacttagatccatacaaggtgtaggaagcttttttggcaaaacacctgcagtcagatactga 20935184  T

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Target: chr2; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 253 - 357
Target Start/End: Complemental strand, 20924287 - 20924183
Alignment:
Q  253 gaaatttccttcaactcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaat 352  Q
    ||||||||| |||| || ||||||||||  | ||   ||||| ||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||    
T  20924287 gaaatttccgtcaagtcgttgaagtttaggcatatggaaagaaatgttagattaatacaaagtgtaggaagctttactggcaccacacctgcagccaaat 20924188  T
Q  353 actga 357  Q
    |||||    
T  20924187 actga 20924183  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 168 - 355
Target Start/End: Complemental strand, 17970708 - 17970521
Alignment:
Q  168 aaagtcaagttaaagtaaatgagtactcacaaatatttctagttttttaagattaggtgcgcttctgaacacacatagagcagttgaaatttccttcaac 267  Q
    |||||||||  |||||||||||||||||||||  |||  || | ||| ||||||||||| |||| ||| || |||  || ||   ||||||||| ||||     
T  17970708 aaagtcaagccaaagtaaatgagtactcacaatcattcttaatctttgaagattaggtgagcttttgagcaaacaaggaacaaccgaaatttccctcaag 17970609  T
Q  268 tcattgaagtttatacttaacaaaagatatgttagattaatacaaggtgtaggaagctttactggaacaacacctgcagccaaatact 355  Q
    |||||||| |||||    || | |||| |  | |||| ||||  |||||| ||||||| ||||||||||| |||||||||||||||||    
T  17970608 tcattgaaatttatttccaaaagaagagaactaagatcaataataggtgtcggaagctctactggaacaatacctgcagccaaatact 17970521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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