View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_30 (Length: 316)
Name: NF11729_high_30
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_30 |
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Alignment Details
Target: chr4 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 280
Target Start/End: Original strand, 37749641 - 37749905
Alignment:
| Q |
16 |
catttataaagaatcacaaaaccagaatgggtgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaac |
115 |
Q |
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| T |
37749641 |
catttataaagaatcacaaaaccagaatgggtgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaac |
37749740 |
T |
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| Q |
116 |
tcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcaccaaattgattggcaccactggactttga |
215 |
Q |
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| T |
37749741 |
tcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattacttttggtttcactaaattgattggcaatactggactttga |
37749840 |
T |
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| Q |
216 |
ctttaattaattaatgttatcattttacaacttttgttatgaagttatatgatcattctgtttca |
280 |
Q |
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| T |
37749841 |
ctttaattaattaatgttctcattttactacttttgttttgaagttatatgatcattctgtttca |
37749905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 16 - 215
Target Start/End: Complemental strand, 37752147 - 37751948
Alignment:
| Q |
16 |
catttataaagaatcacaaaaccagaatgggtgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaac |
115 |
Q |
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| T |
37752147 |
catttataaagaatcacaaaaccagaatgggtgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaac |
37752048 |
T |
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| Q |
116 |
tcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcaccaaattgattggcaccactggactttga |
215 |
Q |
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| T |
37752047 |
tcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattacttttggtttcaccaaattgattggcaccactggactttga |
37751948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 37742571 - 37742770
Alignment:
| Q |
16 |
catttataaagaatcacaaaaccagaatgggtgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaac |
115 |
Q |
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| T |
37742571 |
catttataaagaatcacaaaaccagaatgggtgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaac |
37742670 |
T |
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| Q |
116 |
tcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggctattacttttggtttcaccaaattgattggcaccactggactttga |
215 |
Q |
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| T |
37742671 |
tcctttgatgaggtcttgtgttagagttcttattggaggttggatggctatggccattacttttggtttcactaaattgattggcaatactggactttga |
37742770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 47 - 193
Target Start/End: Complemental strand, 37733215 - 37733069
Alignment:
| Q |
47 |
tgttgttgctgctgtggttagctttgcattgttggtgtttggaggagttggtgcattggttggaaaaactcctttgatgaggtcttgtgttagagttctt |
146 |
Q |
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| T |
37733215 |
tgttgttgttggtatggctagttttgcattgttggtgtttggtggtgtaggagcaatacttggtaaaacatcagtgaaaatgtcttgtgttagagtggtg |
37733116 |
T |
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| Q |
147 |
attggaggttggatggctatggctattacttttggtttcaccaaatt |
193 |
Q |
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| T |
37733115 |
gttggaggttggatggctatggctattacctttggcttaaccaaatt |
37733069 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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