View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_37 (Length: 275)
Name: NF11729_high_37
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_37 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 17 - 257
Target Start/End: Original strand, 45543226 - 45543466
Alignment:
| Q |
17 |
ttttgttccagaagagattacttcaacttcatctgtgtgactttttgattgcatctccactaactcgtcataatatgcttgtttttcaccagtgtttgtg |
116 |
Q |
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| T |
45543226 |
ttttgttccagaagagattacttcaacttcatctgtgtgactttttgattgcatctccactaactcgtcataatatgcttgtttttcaccagtgtttgtg |
45543325 |
T |
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| Q |
117 |
acatctgtcgatactgtttcgatgggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgatgcatcag |
216 |
Q |
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| T |
45543326 |
acatctgtcgatactgtttcgaagggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgctgcatcag |
45543425 |
T |
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| Q |
217 |
attgattttcaacattgtgtgtgatggtgttgaaagtttct |
257 |
Q |
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| T |
45543426 |
attgattttcaacattgtatgtgatggtgttgaaagtttct |
45543466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 17 - 252
Target Start/End: Original strand, 45543757 - 45543998
Alignment:
| Q |
17 |
ttttgttccagaagagattacttcaacttcatctgtgtgactttttgattgcatctccactaactcgtcataatatgcttgtttttcaccagtgtttgtg |
116 |
Q |
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| T |
45543757 |
ttttgttccagaagagattacatcaacttcatctgtgtgactttttgattgcatctccactaactcgtcataatatgcttgtttttcaccatcgtttgtg |
45543856 |
T |
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| Q |
117 |
acatctgtcga-------tactgtttcgatgggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgat |
209 |
Q |
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| T |
45543857 |
a-aggtgttgaaagtttcttcagtttctgagggaatttcatggtttctattgatatctgcggatgttgtttcttgaggatattcattctgaatttctgtt |
45543955 |
T |
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| Q |
210 |
gcatcagattgattttcaacattgtgtgtgatggtgttgaaag |
252 |
Q |
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| T |
45543956 |
gcatcagattgatttccaacagtatttgtgacggcgttgaaag |
45543998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 140 - 240
Target Start/End: Original strand, 45543478 - 45543578
Alignment:
| Q |
140 |
gggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgatgcatcagattgattttcaacattgtgtgtg |
239 |
Q |
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| T |
45543478 |
gggaatttcatggtttcttttgacatctgacgatactgtttcttgaggatattcattctgaatttctgttgcctcagattgattttcaacagtgtttgtg |
45543577 |
T |
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| Q |
240 |
a |
240 |
Q |
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| T |
45543578 |
a |
45543578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 140 - 213
Target Start/End: Original strand, 45544015 - 45544088
Alignment:
| Q |
140 |
gggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgatgcat |
213 |
Q |
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| T |
45544015 |
gggaatttcatggtttatattgatatctgtggatgctgtttcccgaggatattcattctgagtttctgttgcat |
45544088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 140 - 203
Target Start/End: Original strand, 45543607 - 45543670
Alignment:
| Q |
140 |
gggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtt |
203 |
Q |
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| T |
45543607 |
gggaatttcatggtttatattgatatccgtggatgctgtttcccgaggatattcattctgagtt |
45543670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 45544928 - 45544994
Alignment:
| Q |
150 |
tggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgatgcatcag |
216 |
Q |
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| T |
45544928 |
tggtctctattgatatctgtggacaatgtttcctgaggatattcattctgagtttttgttgcatcag |
45544994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 140 - 217
Target Start/End: Original strand, 45548785 - 45548862
Alignment:
| Q |
140 |
gggaatttcatggtttctattgatatctgtggatactgtttcttgaggatattcactctgagtttctgatgcatcaga |
217 |
Q |
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| T |
45548785 |
gggattttcttggtttctattgatgtttttggatactgttacctgaggatattcattcggagtttctgttgcatcaga |
45548862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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