View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11729_high_48 (Length: 247)

Name: NF11729_high_48
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11729_high_48
NF11729_high_48
[»] chr1 (4 HSPs)
chr1 (1-180)||(3873807-3873980)
chr1 (180-231)||(3873711-3873762)
chr1 (32-94)||(28381517-28381578)
chr1 (32-94)||(25388343-25388405)
[»] chr5 (2 HSPs)
chr5 (38-94)||(28449291-28449347)
chr5 (32-94)||(35836763-35836824)
[»] chr3 (2 HSPs)
chr3 (31-80)||(6985469-6985518)
chr3 (32-80)||(8129518-8129566)
[»] chr4 (1 HSPs)
chr4 (32-76)||(17874467-17874511)
[»] chr8 (1 HSPs)
chr8 (32-94)||(39297998-39298059)
[»] scaffold0024 (1 HSPs)
scaffold0024 (32-92)||(87726-87787)
[»] scaffold0036 (1 HSPs)
scaffold0036 (32-80)||(45333-45381)
[»] chr2 (2 HSPs)
chr2 (32-76)||(13415254-13415298)
chr2 (32-80)||(27951943-27951991)


Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 3873980 - 3873807
Alignment:
Q  1 ttgtaatgtaagaaccttgcatgcggagtcatcgaatccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttgnnnnnn 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          
T  3873980 ttgtaatgtaagaaccttgcatgcggagtcatcgagtccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttgtttttt 3873881  T
Q  101 nnagtagtcttttcgatacaccttatactaagaggactgctatataatatagcactgttaatataatccatttttgtttg 180  Q
      ||||||||||||||||||||||||||||| |||||||||||||||     |||| |||||||||||||||||||||||    
T  3873880 ttagtagtcttttcgatacaccttatactaaaaggactgctatataa-----cact-ttaatataatccatttttgtttg 3873807  T

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Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 180 - 231
Target Start/End: Complemental strand, 3873762 - 3873711
Alignment:
Q  180 gatattcatgaacttatttttctgttgtttgtgaagaatatagttgaacatg 231  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3873762 gatattcatgaacttatttttctgttgtttgtgaagaatatagttgaacatg 3873711  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 28381578 - 28381517
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttg 94  Q
    ||||||||||||||||||||||||||||  ||||||||||||||| ||| |||||||||||||    
T  28381578 tcgaatccattgtcgtgtttaggcattggttaaccacttgttgtaattt-tgtgaactgcttg 28381517  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 25388405 - 25388343
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttg 94  Q
    |||| ||| ||||||||||||| ||||| ||| |||||||||||||| | |||||| ||||||    
T  25388405 tcgagtcctttgtcgtgtttagacattggctagccacttgttgtattctgtgtgaattgcttg 25388343  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 38 - 94
Target Start/End: Original strand, 28449291 - 28449347
Alignment:
Q  38 ccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttg 94  Q
    ||||||||||||||||||||||||||||||||| |||||  || |||||||||||||    
T  28449291 ccattgtcgtgtttaggcattgactaaccactttttgtaccttgtgtgaactgcttg 28449347  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 94
Target Start/End: Complemental strand, 35836824 - 35836763
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttg 94  Q
    ||||||||||||||||| ||||||||||  ||||||||||||||| ||| |||||| ||||||    
T  35836824 tcgaatccattgtcgtgcttaggcattggttaaccacttgttgtaattt-tgtgaaatgcttg 35836763  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 80
Target Start/End: Complemental strand, 6985518 - 6985469
Alignment:
Q  31 atcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatttt 80  Q
    |||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  6985518 atcgaatccattgtcgtgtttaggcattggataacaacttgttgtatttt 6985469  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 80
Target Start/End: Complemental strand, 8129566 - 8129518
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatttt 80  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||||||    
T  8129566 tcgaatccattgtcgtgtttaggcattggttaacaacttgttgtatttt 8129518  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 17874511 - 17874467
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 76  Q
    ||||||||||||||||||||||||||||  |||||||||||||||    
T  17874511 tcgaatccattgtcgtgtttaggcattggttaaccacttgttgta 17874467  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 32 - 94
Target Start/End: Original strand, 39297998 - 39298059
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtattttatgtgaactgcttg 94  Q
    |||||| |||||||||||||||||||||  ||||||||||||||| ||| ||| |||||||||    
T  39297998 tcgaattcattgtcgtgtttaggcattggttaaccacttgttgtaattt-tgtaaactgcttg 39298059  T

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Target: scaffold0024 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 32 - 92
Target Start/End: Original strand, 87726 - 87787
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgacta-accacttgttgtattttatgtgaactgct 92  Q
    |||| ||||||||||||||||||||||||||| || | |||||||||||  |||||||||||    
T  87726 tcgagtccattgtcgtgtttaggcattgactagactatttgttgtatttcgtgtgaactgct 87787  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 45333 - 45381
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatttt 80  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||||    
T  45333 tcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatttt 45381  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 76
Target Start/End: Complemental strand, 13415298 - 13415254
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgta 76  Q
    ||||||||||||||||||||||||||||  |||| ||||||||||    
T  13415298 tcgaatccattgtcgtgtttaggcattggttaacaacttgttgta 13415254  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 27951943 - 27951991
Alignment:
Q  32 tcgaatccattgtcgtgtttaggcattgactaaccacttgttgtatttt 80  Q
    ||||||||||||||||||||||||||||  | || ||||||||||||||    
T  27951943 tcgaatccattgtcgtgtttaggcattggttgacaacttgttgtatttt 27951991  T

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