View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11729_high_5 (Length: 608)
Name: NF11729_high_5
Description: NF11729
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11729_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-128; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 218 - 458
Target Start/End: Original strand, 40313815 - 40314055
Alignment:
| Q |
218 |
aagcatgaagtttcgaagttatttatacatgacaataagataaatttacttgtttgatatcaactaacttcaatatcatttgtttagttgaaatcatttt |
317 |
Q |
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| T |
40313815 |
aagcatgaagtttcggagttatttatacatgacaataagataaatttacttgtttgatatcaactaacttcaatatcatttgtttagttgaaatcatttt |
40313914 |
T |
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| Q |
318 |
ccagtattttccattgtggtatttccattactgtgtttatacttcaatgaaaaccatgtttatgagtttcgtttttgtttgtttatgacatgaatatgca |
417 |
Q |
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| T |
40313915 |
ccactattttccattgtggtatttccattactgtgtttatacttcaatgaaaaccatgtttatgagtttcgtttttgtttgtttatgacatgaatatgca |
40314014 |
T |
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| Q |
418 |
tttgtcaaagttgtgttcattactttttgaaaattatattt |
458 |
Q |
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| T |
40314015 |
tttgtcaaagttgtgttcattactttttgaaaattatattt |
40314055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 282 - 458
Target Start/End: Original strand, 40299348 - 40299525
Alignment:
| Q |
282 |
taacttcaatatca-tttgtttagttgaaatcattttccagtattttccattgtggtatttccattactgtgtttatacttcaatgaaaaccatgtttat |
380 |
Q |
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| T |
40299348 |
taactttaatatcaatttgtttagttgtaatcattttccactattttccattgtggtatttcgattactgtgtttatacttcattgaaaaccatgtttat |
40299447 |
T |
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| Q |
381 |
gagtttcgtttttgtttgtttatgacatgaatatgcatttgtcaaagttgtgttcattactttttgaaaattatattt |
458 |
Q |
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| T |
40299448 |
gagtttcgtttttgtttctttatgacatgaatatgcatttgtcaaagttgtgttcattactttttgaaaattatattt |
40299525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 20 - 167
Target Start/End: Original strand, 40313617 - 40313764
Alignment:
| Q |
20 |
gggtggggtactaattggggaaaagaaaactatttgtgtatttgggaatgctactttattacttaataattgcttaagcaaaagtttaggacaaagattc |
119 |
Q |
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| T |
40313617 |
gggtggggtactaattggggaaaagaaaactatttgtgtatttgggaatgctactttattacttaataattgcttaagcaaaagtttaggacaaagattc |
40313716 |
T |
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| Q |
120 |
tctacctttgaggagggaaagttacctagtttcgatatatctatctca |
167 |
Q |
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| T |
40313717 |
tctacctttgaggagggaaagttacctagtttcaatatatctatctca |
40313764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 463 - 601
Target Start/End: Original strand, 40314223 - 40314361
Alignment:
| Q |
463 |
ttgagttttaaaatgaaggcttaacactgtgatgtgtaattgtcacattatatagacttatctcatacggtgccagttagttaatttcattccagaatga |
562 |
Q |
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| T |
40314223 |
ttgagttttaaaatgaaggcttaatactgtgatgtgtaattgtcacattatatagacttatctcatacggtgccagttagttaatttcattctagaatga |
40314322 |
T |
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| Q |
563 |
cattcttatgccggcctgttaataatgattcctatgcta |
601 |
Q |
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| T |
40314323 |
cattcttatgccggcctgttaataatgattcctatgcta |
40314361 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 40298627 - 40298693
Alignment:
| Q |
86 |
taattgcttaagcaaaagtttaggacaaagattctctacctttgaggagggaaagttacctagtttc |
152 |
Q |
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| T |
40298627 |
taattgcttaagcaaaagtttaggacaagaattctctacatttgaggagggaaagttatctactttc |
40298693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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